resources_config.yaml

database_name: Refseq_Ensembl
main_path: "/home/ocanal/Desktop/gene_isoforms/build_gene_transcript_db/db_uri/"
resources:
  mane:
    grch37:
      file_path: ""
      mock_file_path: ""
    grch38:
      refseq_file_path: "mane/MANE.GRCh38.v1.2.refseq_genomic.gff.gz"
      ensembl_file_path: "mane/MANE.GRCh38.v1.2.ensembl_genomic.gff.gz"
      mock_ensembl_file_path: "mane/mock.MANE.GRCh38.v1.2.ensembl_genomic.gff.gz"
      mock_refseq_file_path: "mane/mock.MANE.GRCh38.v1.2.refseq_genomic.gff.gz"
  gencode:
    grch37:
      file_path: "gencode/gencode.v44lift37.annotation.gff3.gz"
      mock_file_path: "gencode/mock.gencode.v44lift37.annotation.gff3.gz"
    grch38:
      file_path: "gencode/gencode.v44.annotation.gff3.gz"
      mock_file_path: "gencode/mock.gencode.v44.annotation.gff3.gz"
  refseq:
    grch37:
      file_path: "refseq/GRCh37_latest_genomic.gff.gz"
      mock_file_path: "refseq/mock.GRCh37_latest_genomic.gff.gz"
    grch38:
      file_path: "refseq/GRCh38_latest_genomic.gff.gz"
      mock_file_path: "refseq/mock.GRCh38_latest_genomic.gff.gz"
  lrg:
    file_path: "lrg/list_LRGs_transcripts_xrefs.txt"
  hugo:
    file_path: "hugo/hgnc_complete_set.txt"