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InexactError: convert(UInt32, -1761558062) #619

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tpapp opened this issue Nov 22, 2024 · 4 comments
Closed

InexactError: convert(UInt32, -1761558062) #619

tpapp opened this issue Nov 22, 2024 · 4 comments

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@tpapp
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tpapp commented Nov 22, 2024

I am experiencing the error above using Julia v1.11, JLD2 v0.5.9. JLD2 0.5.5 works fine. If you prefer, I can try a bisection. Unfortunately the dataset is huge and I was not able to create an MWE, but it can be shared privately if you need it.

Here is the stacktrace:

julia> couples_posterior = load_posterior(; variant)
ERROR: InexactError: convert(UInt32, -1761558062)
Stacktrace:
  [1] throw_inexacterror(::Symbol, ::Vararg{Any})
    @ Core ./boot.jl:750
  [2] check_sign_bit
    @ ./boot.jl:756 [inlined]
  [3] toUInt32
    @ ./boot.jl:855 [inlined]
  [4] UInt32
    @ ./boot.jl:896 [inlined]
  [5] convert
    @ ./number.jl:7 [inlined]
  [6] rconvert
    @ ~/.julia/packages/JLD2/h8zCA/src/data/custom_serialization.jl:9 [inlined]
  [7] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
  [8] jlconvert
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
 [10] jlconvert
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/io/dataio.jl:125 [inlined]
 [12] macro expansion
    @ ./simdloop.jl:77 [inlined]
 [13] read_array!(v::Vector{…}, f::JLD2.JLDFile{…}, rr::JLD2.MappedRepr{…})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/io/dataio.jl:122
 [14] read_array(f::JLD2.JLDFile{…}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{…})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:239
 [15] read_data(f::JLD2.JLDFile{…}, rr::Any, read_dataspace::Tuple{…}, attributes::Vector{…})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:98
 [16] read_data(f::JLD2.JLDFile{…}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{…})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:84
 [17] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:48
 [18] jlconvert(::JLD2.MappedRepr{…}, f::JLD2.JLDFile{…}, ptr::Ptr{…}, ::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/data/writing_datatypes.jl:338
 [19] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:697 [inlined]
 [20] jlconvert(::JLD2.MappedRepr{…}, f::JLD2.JLDFile{…}, ptr::Ptr{…}, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650
 [21] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/io/dataio.jl:107
 [22] read_data(f::JLD2.JLDFile{…}, rr::Any, read_dataspace::Tuple{…}, attributes::Vector{…})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:96
 [23] read_data(f::JLD2.JLDFile{…}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters
::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{…})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:84
 [24] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:48
 [25] getindex(g::JLD2.Group{JLD2.JLDFile{JLD2.MmapIO}}, name::String)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/groups.jl:99
 [26] getindex
    @ ~/.julia/packages/JLD2/h8zCA/src/JLD2.jl:349 [inlined]
 [27] (::JLD2.var"#105#106"{String})(file::JLD2.JLDFile{JLD2.MmapIO})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:252
 [28] jldopen(::Function, ::String, ::Vararg{String}; kws::@Kwargs{})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:4
 [29] jldopen
    @ ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:1 [inlined]
 [30] load_object
    @ ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:248 [inlined]
@JonasIsensee
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Hi @tpapp ,

Do you think you could generate a stacktrace without the shortened type signatures?

That might already help me pin down the issue.

@tpapp
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tpapp commented Nov 25, 2024

@JonasIsensee: sorry, should have done that in the first place.

julia> show(err)
1-element ExceptionStack:
InexactError: convert(UInt32, -1761558062)
Stacktrace:
  [1] throw_inexacterror(::Symbol, ::Vararg{Any})
    @ Core ./boot.jl:750
  [2] check_sign_bit
    @ ./boot.jl:756 [inlined]
  [3] toUInt32
    @ ./boot.jl:855 [inlined]
  [4] UInt32
    @ ./boot.jl:896 [inlined]
  [5] convert
    @ ./number.jl:7 [inlined]
  [6] rconvert
    @ ~/.julia/packages/JLD2/h8zCA/src/data/custom_serialization.jl:9 [inlined]
  [7] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
  [8] jlconvert
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
 [10] jlconvert
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/io/dataio.jl:125 [inlined]
 [12] macro expansion
    @ ./simdloop.jl:77 [inlined]
 [13] read_array!(v::Vector{DynamicHMC.TreeStatisticsNUTS}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.MappedRepr{DynamicHMC.TreeStatisticsNUTS, JLD2.OnDiskRepresentation{(0, 8, 16, 32, 40, 48), Tuple{Float64, Int64, DynamicHMC.InvalidTree, Float64, Int64, DynamicHMC.Directions}, Tuple{Float64, Int64, DynamicHMC.InvalidTree, Float64, Int64, JLD2.OnDiskRepresentation{(0,), Tuple{Int32}, Tuple{Int32}, 4}}, 52}})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/io/dataio.jl:122
 [14] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:239
 [15] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:98
 [16] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:84
 [17] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:48
 [18] jlconvert(::JLD2.MappedRepr{Vector{DynamicHMC.TreeStatisticsNUTS}, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/data/writing_datatypes.jl:338
 [19] macro expansion
    @ ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:697 [inlined]
 [20] jlconvert(::JLD2.MappedRepr{@NamedTuple{posterior_matrix::Matrix{Float64}, tree_statistics::Vector{DynamicHMC.TreeStatisticsNUTS}, κ::DynamicHMC.GaussianKineticEnergy{LinearAlgebra.Diagonal{Float64, Vector{Float64}}, LinearAlgebra.Diagonal{Float64, Vector{Float64}}}, ϵ::Float64}, JLD2.OnDiskRepresentation{(0, 8, 16, 32), Tuple{Matrix{Float64}, Vector{DynamicHMC.TreeStatisticsNUTS}, DynamicHMC.GaussianKineticEnergy{LinearAlgebra.Diagonal{Float64, Vector{Float64}}, LinearAlgebra.Diagonal{Float64, Vector{Float64}}}, Float64}, Tuple{JLD2.RelOffset, JLD2.RelOffset, JLD2.OnDiskRepresentation{(0, 8), Tuple{LinearAlgebra.Diagonal{Float64, Vector{Float64}}, LinearAlgebra.Diagonal{Float64, Vector{Float64}}}, Tuple{
JLD2.OnDiskRepresentation{(0,), Tuple{Vector{Float64}}, Tuple{JLD2.RelOffset}, 8}, JLD2.OnDiskRepresentation{(0,), Tuple
{Vector{Float64}}, Tuple{JLD2.RelOffset}, 8}}, 16}, Float64}, 40}}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, hea
der_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/data/reconstructing_datatypes.jl:650
 [21] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/io/dataio.jl:107
 [22] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.Da
taLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:96
 [23] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayou
t, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:84
 [24] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/datasets.jl:48
 [25] getindex(g::JLD2.Group{JLD2.JLDFile{JLD2.MmapIO}}, name::String)
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/groups.jl:99
 [26] getindex
    @ ~/.julia/packages/JLD2/h8zCA/src/JLD2.jl:349 [inlined]
 [27] (::JLD2.var"#105#106"{String})(file::JLD2.JLDFile{JLD2.MmapIO})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:252
 [28] jldopen(::Function, ::String, ::Vararg{String}; kws::@Kwargs{})
    @ JLD2 ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:4
 [29] jldopen
    @ ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:1 [inlined]
 [30] load_object
    @ ~/.julia/packages/JLD2/h8zCA/src/loadsave.jl:248 [inlined]
 [31] #91
    @ ./none:0 [inlined]
 [32] iterate
    @ ./generator.jl:48 [inlined]
 [33] collect(itr::Base.Generator{UnitRange{Int64}, CouplesTimeuse.var"#91#93"{String}})
    @ Base ./array.jl:780
 [34] load_posterior(; variant::String, root_path::String, chains::UnitRange{Int64})
    @ CouplesTimeuse ~/research/spouses-time-allocation/CouplesTimeuse/src/couples_analysis.jl:21
 [35] top-level scope
    @ REPL[6]:1

@JonasIsensee
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Thanks!
I'm fairly certain that this is due to a typo I made while refactoring:

julia> jldsave("test.jld2"; u=typemax(UInt32))

julia> load("test.jld2")
Dict{String, Any} with 1 entry:
  "u" => -1

This is fixed in #622. Would you please check, if this fixes your issue?

@tpapp
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tpapp commented Nov 25, 2024

Yes, I can confirm that it fixes the issue. Thanks for the quick fix!

If possible, please tag a patch release with this.

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@tpapp @JonasIsensee