HISTORY.md

History

0.4.0 (2024-12-05)

• Upgrade Snakemake to v8.25.5
• Feat: Add bgcflow run --antismash_mode to enable use fungi version using BGCFlow environment variables
• Fix: Security updates
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0.4.0 (2024-06-20)

• Upgrade Snakemake to v8.14.0
• Fix: Improve get-result command to be more intuitive
• Docs: Update citation
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0.3.5 (2024-06-01)

• Snakemake fix and security update by @matinnuhamunada in #39
• Fix: Pin pulp version to 2.7.0 to address snakemake dependency issue: snakemake/snakemake#2606
• Feat: add --profile parameters on bgcflow run to use snakemake profiles
• Chore(deps): bump pip from 22.3.1 to 23.3 by @dependabot in #40
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0.3.4 (2023-11-22)

• Synchronize with BGCFlow version 0.7.9
• Feat: add CLI option for lsabgc and ppanggolin by @matinnuhamunada in PR #37
• Chore: Auto detect available CPU
• Feat: give option to turn off panoptes
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0.3.3 (2023-11-20)

• Fix: Pin snakemake to v7.31.1 for compatibility with panoptes-ui job monitoring. PR #35
• Chore: Security updates. PR #35
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0.3.2 (2023-10-12)

• Release package in PyPi
• Change: Downgrade pandas. PR #29
• Chore: Dependency updates including urllib3 and cryptography. PR #31, PR #30
• New Contributor: @dependabot. PR #31
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0.3.1 (2023-08-27)

• Update: Read project metadata for dbt models synchronization. Manual definition of dbt models to exclude also added.
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0.3.0 (2023-08-26)

• Docs: Refer to wiki for tutorial. PR #26
• Feature: Use metabase API and dbt-metabase for uploading and syncing model relationships. PR #27
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0.2.8 (2023-08-21)

• Improvement: Enhanced mkdocs report handling, dependency management, and example copying in bgcflow init.
• Update: Utilize BGCFlow v0.7.2 version dependencies metadata.
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0.2.7 (2023-08-09)

• New Feature: Organize report by subcategory.
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0.2.6 (2023-08-09)

• Security Update: Addressed security concerns.
• Improvements: CLI, testing, and new features including panoptes wrapper and subworkflows.
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0.2.5 (2023-08-01)

• Fix: Correct alias parsing to accommodate bgcflow v0.7.0. PR #20
• Chore: Security update. PR #21
• New Contributor: @OmkarSaMo. PR #19
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0.2.4 (2023-06-27)

• Update: Dependency update for improved stability and performance. PR #17, PR #18
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0.2.3 (2023-06-15)

• Fix: Correct UnicodeEncodeError in Windows. PR #7
• Docs: Add graphical abstract. PR #16
• This release is compatible with BGCFlow version 0.6.1 and version 0.6.2.
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0.2.2 (2023-01-30)

• Pre-release: Compatibility with BGCFlow 0.6.0.
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0.2.1 (2022-11-18)

• Migration: Migrate to NBChub repo.
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0.2.0 (2022-11-18)

• Minor updates and enhancements.
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0.1.0 (2022-11-17)

• Initial release of the package.