From 1cfbfb7b1b14270773878087ca4c21abfd79ca19 Mon Sep 17 00:00:00 2001 From: John Kerl Date: Thu, 12 Dec 2024 10:21:43 -0500 Subject: [PATCH 1/4] DESCRIPTION and NEWS.md --- DESCRIPTION | 2 +- NEWS.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 8012985510..af632b68d1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: tiledb Type: Package -Version: 0.30.2.5 +Version: 0.31.0 Title: Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays Authors@R: c( person("TileDB, Inc.", role = c("aut", "cph")), diff --git a/NEWS.md b/NEWS.md index fab5f1ba57..0c286fa38a 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# Unreleased +# tiledb 0.31.0 * Update docs with correct S4 methods * Run `clang-format` on non-autogen C++ source code From eb340e2d9eb6acf33853e8ecdeaee4bc37c8f281 Mon Sep 17 00:00:00 2001 From: John Kerl Date: Thu, 12 Dec 2024 10:22:28 -0500 Subject: [PATCH 2/4] version update in README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 96b450ef4b..3e51e96ca5 100644 --- a/README.md +++ b/README.md @@ -39,7 +39,7 @@ The most recent released version can be installed from > remotes::install_github("TileDB-Inc/TileDB-R") ... > library(tiledb) - TileDB R 0.30.0 with TileDB Embedded 2.26.0 on Ubuntu 24.04. + TileDB R 0.31.0 with TileDB Embedded 2.27.0 on Ubuntu 24.04. See https://tiledb.com for more information about TileDB. > help(package=tiledb) From f04293de3103b635e918b410c342775857ba8076 Mon Sep 17 00:00:00 2001 From: John Kerl Date: Thu, 12 Dec 2024 10:25:36 -0500 Subject: [PATCH 3/4] pkgdown::build_site() --- docs/404.html | 6 +- docs/LICENSE-text.html | 4 +- docs/articles/data-ingestion-from-sql.html | 8 +- docs/articles/documentation.html | 6 +- docs/articles/index.html | 4 +- docs/articles/installation-options.html | 6 +- docs/articles/introduction.html | 6 +- docs/articles/tiledb-mariadb-examples.html | 6 +- docs/authors.html | 8 +- docs/deps/data-deps.txt | 6 +- docs/deps/font-awesome-6.5.2/css/all.css | 8028 +++++++++++++++++ docs/deps/font-awesome-6.5.2/css/all.min.css | 9 + docs/deps/font-awesome-6.5.2/css/v4-shims.css | 2194 +++++ .../font-awesome-6.5.2/css/v4-shims.min.css | 6 + .../webfonts/fa-brands-400.ttf | Bin 0 -> 209128 bytes .../webfonts/fa-brands-400.woff2 | Bin 0 -> 117852 bytes .../webfonts/fa-regular-400.ttf | Bin 0 -> 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docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf create mode 100644 docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2 create mode 100644 docs/reference/.core_hash.html create mode 100644 docs/reference/dot-core_info.html create mode 100644 docs/reference/dot-pkg_config.html diff --git a/docs/404.html b/docs/404.html index 323fa45cdb..beda4d61dc 100644 --- a/docs/404.html +++ b/docs/404.html @@ -14,8 +14,8 @@ - - + + @@ -26,7 +26,7 @@ tiledb - 0.30.2 + 0.31.0 + + + + + +
+
+
+ +
+

Get version and install information of the core libtiledb install

+
+ +
+

Usage

+
.core_info()
+
+.core_hash()
+
+ +
+

Value

+

.core_info(): A named character vector with the following entries:

  • version”: libtiledb version

  • +
  • libtype”: type of libtiledb install; will be one +of “vendored”, “system”, or “unknown

  • +

.core_hash(): The MD5 hash of the core info

+
+
+

Checking the libtiledb information in downstream packages

+ + +

These functions are designed to make it easy to test if the core +libtiledb install has changed. This is accomplished by adding a +build-time constant to cache the version of libtiledb was built with. +For example, in zzz.R, put the following line to cache the +libtiledb information during package build


+.built_with <- list(libtiledb = tiledb::.core_hash())

Then, in the load hook, add the following check


+.onLoad <- function(libname, pkgname) {
+  if (.built_with$libtiledb != tiledb::.core_hash()) {
+    warning("Core libtiledb has changed, please reinstall ", pkgname)
+  }
+}

This will throw a warning if tiledb, and therefore libtiledb, +has changed between downstream package install and load

+
+ +
+

Examples

+
.core_info()
+#>  version  libtype 
+#> "2.27.0" "system" 
+
+.core_hash()
+#> [1] "17c9b4d820870f7c171fccf2be8fdfea"
+
+
+
+
+ + +
+ + + +
+ + + + + + + diff --git a/docs/reference/dot-pkg_config.html b/docs/reference/dot-pkg_config.html new file mode 100644 index 0000000000..001b664fd1 --- /dev/null +++ b/docs/reference/dot-pkg_config.html @@ -0,0 +1,107 @@ + +Compiler Arguments for Using libtiledb — .pkg_config • tiledb + Skip to contents + + +
+
+
+ +
+

Get compiler flags for using the core libtiledb install +used by tiledb

+
+ +
+

Usage

+
.pkg_config(opt = c("PKG_CXX_FLAGS", "PKG_CXX_LIBS"))
+
+ +
+

Arguments

+ + +
opt
+

A single character value with the package configuration variable +to fetch; choose from

  • PKG_CXX_FLAGS”: compiler flags for libtiledb

  • +
  • PKG_CXX_LIBS”: linking flags for libtiledb

  • +
+ +
+
+

Value

+

A single string containing either the include directories or linking +directories for libtiledb

+
+ +
+

Examples

+
.pkg_config()
+#> [1] "-I/usr/local/include"
+.pkg_config("PKG_CXX_LIBS")
+#> [1] "-L/usr/local/lib -ltiledb"
+
+
+
+
+ + +
+ + + +
+ + + + + + + diff --git a/docs/reference/extended-set-tiledb_array-method.html b/docs/reference/extended-set-tiledb_array-method.html index 40163f9484..f3b836321c 100644 --- a/docs/reference/extended-set-tiledb_array-method.html +++ b/docs/reference/extended-set-tiledb_array-method.html @@ -1,9 +1,9 @@ -Set data.frame extended return columns toggle — extended<- • tiledb +Set data.frame extended return columns toggle — extended<- • tiledb Skip to contents @@ -11,7 +11,7 @@ tiledb - 0.30.2 + 0.31.0