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Simulate Single-end reads #158

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Pitithat-pu opened this issue Mar 14, 2018 · 1 comment
Open

Simulate Single-end reads #158

Pitithat-pu opened this issue Mar 14, 2018 · 1 comment

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@Pitithat-pu
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Pitithat-pu commented Mar 14, 2018 •
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Hi Developers,
How to set the Varsim parameters to simulate a single-end file of shallow whole-genome sequencing (0.5x) given mean fragment size of 167 bp?
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Pitithat
@Pitithat-pu Pitithat-pu changed the title Simulate Single-end read Simulate Single-end reads Mar 14, 2018
@yunfeiguo
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yunfeiguo commented Mar 14, 2018 •
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Hi @Pitithat-pu
Right now it does not support single-end read. One simple workaround is generate paired-end reads, but only use first or second read in a pair. FYI @marghoob

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@yunfeiguo @Pitithat-pu