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Merging of previously sorted BAM files #1990

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fgvieira opened this issue Jan 29, 2025 · 0 comments
Open

Merging of previously sorted BAM files #1990

fgvieira opened this issue Jan 29, 2025 · 0 comments

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@fgvieira
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When sorting several pre-sorted BAM files (either by query or coordinate) with different headers, is it possible to merge them with MergeSamFiles keeping the original sorting?

I am working with very large BAM files and sorting the BA file after merging would take a considerable amount of time!

Thanks,
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@fgvieira