From e05cb7b65218833896b2cbf015fc317302b6b89f Mon Sep 17 00:00:00 2001
From: Francesco Terenzi <fra.terenz1993@gmail.com>
Date: Thu, 11 Aug 2022 09:14:20 +0100
Subject: [PATCH] v0.4.2

---
 CHANGELOG.md              | 8 ++++++++
 Cargo.lock                | 8 ++++----
 Cargo.toml                | 2 +-
 ecdna-data/Cargo.toml     | 2 +-
 ecdna-dynamics/Cargo.toml | 2 +-
 ecdna-sim/Cargo.toml      | 2 +-
 ecdna/Cargo.toml          | 2 +-
 7 files changed, 17 insertions(+), 9 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index a462b75..12c82ac 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -67,4 +67,12 @@ both `abc` and `simulate`).
 - Bug in the cell culture experiment with subsampling: restarting from one
 subsample from the whole distribution with correct `idx`, issue #65
 
+## 0.4.2
+### Fixed
+- Sampling was performed with replacement, now without replacement (might
+need more memory)
+- Remove `results` folder from preprocess app
+- The computation of the `ks_distance` has changed by taking into account the
+loss of precision in converting `u16` to `f16`
+- Dont panic when computing the variance when there are no N+ cells, but return 0
 
diff --git a/Cargo.lock b/Cargo.lock
index 2391ba4..24a473c 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -249,7 +249,7 @@ dependencies = [
 
 [[package]]
 name = "ecdna"
-version = "0.4.1"
+version = "0.4.2"
 dependencies = [
  "anyhow",
  "chrono",
@@ -277,7 +277,7 @@ dependencies = [
 
 [[package]]
 name = "ecdna-data"
-version = "0.4.1"
+version = "0.4.2"
 dependencies = [
  "anyhow",
  "derive_builder",
@@ -296,7 +296,7 @@ dependencies = [
 
 [[package]]
 name = "ecdna-dynamics"
-version = "0.4.1"
+version = "0.4.2"
 dependencies = [
  "anyhow",
  "ecdna-data",
@@ -309,7 +309,7 @@ dependencies = [
 
 [[package]]
 name = "ecdna-sim"
-version = "0.4.1"
+version = "0.4.2"
 dependencies = [
  "anyhow",
  "enum_dispatch",
diff --git a/Cargo.toml b/Cargo.toml
index 0e9f612..38848a8 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -12,5 +12,5 @@ codegen-units = 1
 
 [workspace.metadata]
 name = "ecdna"
-version = "0.4.1"
+version = "0.4.2"
 
diff --git a/ecdna-data/Cargo.toml b/ecdna-data/Cargo.toml
index 5dcd2af..3bcee44 100644
--- a/ecdna-data/Cargo.toml
+++ b/ecdna-data/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "ecdna-data"
-version = "0.4.1"
+version = "0.4.2"
 edition = "2021"
 
 [dependencies]
diff --git a/ecdna-dynamics/Cargo.toml b/ecdna-dynamics/Cargo.toml
index fa6d834..82763eb 100644
--- a/ecdna-dynamics/Cargo.toml
+++ b/ecdna-dynamics/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "ecdna-dynamics"
-version = "0.4.1"
+version = "0.4.2"
 edition = "2021"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
diff --git a/ecdna-sim/Cargo.toml b/ecdna-sim/Cargo.toml
index e5e7669..8f39ac6 100644
--- a/ecdna-sim/Cargo.toml
+++ b/ecdna-sim/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "ecdna-sim"
-version = "0.4.1"
+version = "0.4.2"
 edition = "2021"
 authors = ["Francesco Terenzi"]
 description = "Evolutionary models of extrachromosomal DNA (ecDNA)."
diff --git a/ecdna/Cargo.toml b/ecdna/Cargo.toml
index 0ce8611..6c14e22 100644
--- a/ecdna/Cargo.toml
+++ b/ecdna/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "ecdna"
-version = "0.4.1"
+version = "0.4.2"
 edition = "2021"
 authors = ["Francesco Terenzi"]
 description = "Evolutionary Models of extrachromosomal DNAs"