From 47e96a356b5396bcf7ea734108b79a4206ca8bea Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Umut=20Utku=20ER=C5=9EAH=C4=B0NCE?= Date: Thu, 18 Jul 2024 11:51:59 +0300 Subject: [PATCH] item 1 related svg updates #734 --- app/img/nodes/RNA.svg | 64 +++++++++++++-- app/img/nodes/and.svg | 56 ++++++------- app/img/nodes/association.svg | 57 ++++++------- app/img/nodes/complex-sbml.svg | 53 ++++++------ app/img/nodes/complex.svg | 57 ++++++------- app/img/nodes/degradation.svg | 57 ++++++------- app/img/nodes/delay.svg | 58 +++++++------- app/img/nodes/dissociation.svg | 93 ++++++++++++---------- app/img/nodes/drug.svg | 73 +++++++++++++++-- app/img/nodes/empty-set.svg | 55 +++++++------ app/img/nodes/ion-channel.svg | 19 ++--- app/img/nodes/ion.svg | 57 +++++++++++-- app/img/nodes/macromolecule.svg | 49 ++++++------ app/img/nodes/not.svg | 56 ++++++------- app/img/nodes/nucleic-acid-feature.svg | 39 ++++----- app/img/nodes/omitted-process-sbml.svg | 4 +- app/img/nodes/omitted-process.svg | 48 +++++------ app/img/nodes/or.svg | 61 +++++++------- app/img/nodes/perturbing-agent.svg | 39 ++++----- app/img/nodes/phenotype-sbml.svg | 41 +++++----- app/img/nodes/phenotype.svg | 39 ++++----- app/img/nodes/process.svg | 45 ++++++----- app/img/nodes/protein.svg | 47 ++++++----- app/img/nodes/simple-chemical.svg | 63 ++++++++------- app/img/nodes/simple-molecule.svg | 58 ++++++++++++-- app/img/nodes/submap.svg | 43 +++++----- app/img/nodes/tag.svg | 55 +++++++------ app/img/nodes/truncated-process.svg | 12 +-- app/img/nodes/truncated-protein.svg | 57 +++++++++++-- app/img/nodes/uncertain-process.svg | 44 +++++----- app/img/nodes/unknown-logical-operator.svg | 60 +++++++------- app/img/nodes/unknown-molecule.svg | 58 ++++++++++++-- app/img/nodes/unspecified-entity.svg | 45 ++++++----- app/img/sbml-legend.svg | 59 +++++++------- package.json | 2 +- 35 files changed, 1038 insertions(+), 685 deletions(-) diff --git a/app/img/nodes/RNA.svg b/app/img/nodes/RNA.svg index cc36eb664..b9b770276 100644 --- a/app/img/nodes/RNA.svg +++ b/app/img/nodes/RNA.svg @@ -1,8 +1,58 @@ - + - - - - - - \ No newline at end of file + + + + + + + + + + diff --git a/app/img/nodes/and.svg b/app/img/nodes/and.svg index 404274f74..912967571 100644 --- a/app/img/nodes/and.svg +++ b/app/img/nodes/and.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -199,32 +202,31 @@ inkscape:label="Layer 1" inkscape:groupmode="layer" id="layer1" - transform="translate(-458.55017,-350.96411)"> + transform="matrix(1.0303625,0,0,1.0955712,-474.63379,-386.75137)"> AND + style="font-size:17.5px;line-height:0%;letter-spacing:-1.2px">AND diff --git a/app/img/nodes/association.svg b/app/img/nodes/association.svg index d80c4df0b..7d812ae06 100644 --- a/app/img/nodes/association.svg +++ b/app/img/nodes/association.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -202,34 +205,34 @@ transform="translate(-483.32661,-258.09914)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  + y="363.07648" + style="font-size:15px;line-height:1.25">  + r="21.335749" /> diff --git a/app/img/nodes/complex-sbml.svg b/app/img/nodes/complex-sbml.svg index 214a72ab8..f1012e533 100644 --- a/app/img/nodes/complex-sbml.svg +++ b/app/img/nodes/complex-sbml.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -202,26 +205,26 @@ transform="translate(-7.6400969,-208.12166)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  + y="363.07648" + style="font-size:15px;line-height:1.25">  + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -202,29 +205,29 @@ transform="translate(-7.6400969,-208.12166)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  + y="363.07648" + style="font-size:15px;line-height:1.25">  + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -202,29 +205,29 @@ transform="translate(-11.541668,-349.61682)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  + y="363.07648" + style="font-size:15px;line-height:1.25">  + transform="matrix(1.090265,0,0,1.0955994,-3.7547856,-35.679599)"> + style="fill:none;stroke:#000000;stroke-width:3.99236;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1" /> diff --git a/app/img/nodes/delay.svg b/app/img/nodes/delay.svg index 6441d4dd6..282fdf2da 100644 --- a/app/img/nodes/delay.svg +++ b/app/img/nodes/delay.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -191,7 +194,7 @@ image/svg+xml - + @@ -202,25 +205,24 @@ transform="translate(-458.55017,-350.96411)"> τ + x="481.59146" + y="382.71436" + style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:35px;line-height:0%;font-family:Cambria;-inkscape-font-specification:'Cambria Bold';letter-spacing:-1.2px">τ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -199,46 +202,50 @@ inkscape:label="Layer 1" inkscape:groupmode="layer" id="layer1" - transform="translate(-483.32661,-258.09914)"> + transform="translate(-481.89804,-258.09914)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  - - + y="363.07648" + style="font-size:15px;line-height:1.25">  + + + + diff --git a/app/img/nodes/drug.svg b/app/img/nodes/drug.svg index 62ac6216d..74d7f9e73 100644 --- a/app/img/nodes/drug.svg +++ b/app/img/nodes/drug.svg @@ -1,9 +1,66 @@ - + - - - - - - - \ No newline at end of file + + + + + + + + + diff --git a/app/img/nodes/empty-set.svg b/app/img/nodes/empty-set.svg index fb8a18416..8b4950da7 100644 --- a/app/img/nodes/empty-set.svg +++ b/app/img/nodes/empty-set.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -202,29 +205,29 @@ transform="translate(-11.541668,-349.61682)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  + y="363.07648" + style="font-size:15px;line-height:1.25">  + transform="matrix(1.0721767,0,0,1.0915895,-3.3199742,-34.288485)"> + style="fill:none;stroke:#000000;stroke-width:3.99236;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1" /> diff --git a/app/img/nodes/ion-channel.svg b/app/img/nodes/ion-channel.svg index c2d5681b7..c9a1d099c 100644 --- a/app/img/nodes/ion-channel.svg +++ b/app/img/nodes/ion-channel.svg @@ -3,9 +3,9 @@ + inkscape:window-maximized="1" + inkscape:current-layer="svg2" + showgrid="false" /> + transform="matrix(1.453142,0,0,1.4220446,-1.953142,-12.711822)"> + - - - - - - \ No newline at end of file + + + + + + + + diff --git a/app/img/nodes/macromolecule.svg b/app/img/nodes/macromolecule.svg index 5a5601cd4..87acd8970 100644 --- a/app/img/nodes/macromolecule.svg +++ b/app/img/nodes/macromolecule.svg @@ -2,20 +2,20 @@ + inkscape:version="1.3.2 (091e20e, 2023-11-25)" + sodipodi:docname="macromolecule.svg" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + inkscape:window-width="1440" + inkscape:window-height="847" + inkscape:window-x="0" + inkscape:window-y="25" + inkscape:window-maximized="0" + units="px" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -59,13 +62,13 @@ id="layer1" transform="translate(-297.85716,-312.93362)"> diff --git a/app/img/nodes/not.svg b/app/img/nodes/not.svg index 9af3a1ae3..a1604525e 100644 --- a/app/img/nodes/not.svg +++ b/app/img/nodes/not.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -191,7 +194,7 @@ image/svg+xml - + @@ -201,29 +204,28 @@ id="layer1" transform="translate(-458.55017,-350.96411)"> NOT + style="font-size:17.5px;line-height:0%;letter-spacing:-1.2px">NOT diff --git a/app/img/nodes/nucleic-acid-feature.svg b/app/img/nodes/nucleic-acid-feature.svg index f025e8069..4e0a32b62 100644 --- a/app/img/nodes/nucleic-acid-feature.svg +++ b/app/img/nodes/nucleic-acid-feature.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -201,8 +204,8 @@ id="layer1" transform="translate(-8.0141601,-302.43192)"> + transform="matrix(1.3566794,0,0,1.327508,-667.39872,-292.29564)"> + style="shape-rendering:crispEdges" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -200,7 +203,7 @@ inkscape:label="Layer 1" inkscape:groupmode="layer" id="layer1" - transform="translate(-484.31778,-214.19089)"> + transform="matrix(1.3551972,0,0,1.3295487,-665.76738,-292.74497)"> \\ diff --git a/app/img/nodes/or.svg b/app/img/nodes/or.svg index 953d911e1..dd69da78b 100644 --- a/app/img/nodes/or.svg +++ b/app/img/nodes/or.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -191,7 +194,7 @@ image/svg+xml - + @@ -201,29 +204,29 @@ id="layer1" transform="translate(-458.55017,-350.96411)"> OR + x="466.7601" + y="388.06613" + style="font-size:17.8139px;line-height:0%;letter-spacing:-1.22153px;stroke-width:1.01794">OR diff --git a/app/img/nodes/perturbing-agent.svg b/app/img/nodes/perturbing-agent.svg index 90edad9d8..0aa4d86c4 100644 --- a/app/img/nodes/perturbing-agent.svg +++ b/app/img/nodes/perturbing-agent.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -201,8 +204,8 @@ id="layer1" transform="translate(-8.6852165,-396.75099)"> + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -201,8 +204,8 @@ id="layer1" transform="translate(-237.38057,-159.97377)"> + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -201,8 +204,8 @@ id="layer1" transform="translate(-237.38057,-159.97377)"> + style="shape-rendering:crispEdges" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -202,12 +205,12 @@ id="layer1" transform="translate(-484.31778,-214.19089)"> + inkscape:version="1.3.2 (091e20e, 2023-11-25)" + sodipodi:docname="protein.svg" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + units="px" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -59,13 +62,13 @@ id="layer1" transform="translate(-297.85716,-312.93362)"> diff --git a/app/img/nodes/simple-chemical.svg b/app/img/nodes/simple-chemical.svg index 99d1c97a8..2e12b0b9f 100644 --- a/app/img/nodes/simple-chemical.svg +++ b/app/img/nodes/simple-chemical.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -202,34 +205,34 @@ transform="translate(-6.5142553,-160.96843)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  + y="363.07648" + style="font-size:15px;line-height:1.25">  diff --git a/app/img/nodes/simple-molecule.svg b/app/img/nodes/simple-molecule.svg index 44c92fe5e..96bb77376 100644 --- a/app/img/nodes/simple-molecule.svg +++ b/app/img/nodes/simple-molecule.svg @@ -1,8 +1,52 @@ - + - - - - - - \ No newline at end of file + + + + + + + + diff --git a/app/img/nodes/submap.svg b/app/img/nodes/submap.svg index 3fcb1e169..04eb9da37 100644 --- a/app/img/nodes/submap.svg +++ b/app/img/nodes/submap.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -201,12 +204,12 @@ id="layer1" transform="translate(-238.20243,-112.80493)"> diff --git a/app/img/nodes/tag.svg b/app/img/nodes/tag.svg index fd4086da4..42faae0be 100644 --- a/app/img/nodes/tag.svg +++ b/app/img/nodes/tag.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + showguides="false" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -203,29 +206,29 @@ transform="translate(-237.35697,-207.12713)"> + y="336.64789" + style="font-size:12.5px;line-height:1.25">  + y="363.07648" + style="font-size:15px;line-height:1.25">  + inkscape:current-layer="svg3" /> + transform="matrix(1.3421152,0,0,1.3472419,2.407602,-11.216057)"> + - - - - - - \ No newline at end of file + + + + + + + + diff --git a/app/img/nodes/uncertain-process.svg b/app/img/nodes/uncertain-process.svg index dec252e79..91ca5508e 100644 --- a/app/img/nodes/uncertain-process.svg +++ b/app/img/nodes/uncertain-process.svg @@ -2,23 +2,23 @@ + style="shape-rendering:crispEdges" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -200,7 +203,7 @@ inkscape:label="Layer 1" inkscape:groupmode="layer" id="layer1" - transform="translate(-484.31778,-214.19089)"> + transform="matrix(1.3572175,0,0,1.3279622,-668.26197,-292.45032)"> ? + style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:25px;line-height:1.25;font-family:Arial;-inkscape-font-specification:'Arial Bold'">? diff --git a/app/img/nodes/unknown-logical-operator.svg b/app/img/nodes/unknown-logical-operator.svg index af5b9fd23..43057a1d2 100644 --- a/app/img/nodes/unknown-logical-operator.svg +++ b/app/img/nodes/unknown-logical-operator.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="7" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -199,32 +202,31 @@ inkscape:label="Layer 1" inkscape:groupmode="layer" id="layer1" - transform="translate(-458.55017,-350.96411)"> + transform="translate(-458.55017,-350.96412)"> ? + style="font-size:19.5px;line-height:0%;letter-spacing:-1.2px">? diff --git a/app/img/nodes/unknown-molecule.svg b/app/img/nodes/unknown-molecule.svg index 4adbdd258..d18192586 100644 --- a/app/img/nodes/unknown-molecule.svg +++ b/app/img/nodes/unknown-molecule.svg @@ -1,8 +1,52 @@ - + - - - - - - \ No newline at end of file + + + + + + + + diff --git a/app/img/nodes/unspecified-entity.svg b/app/img/nodes/unspecified-entity.svg index 5f4df1d15..da6b2e8e9 100644 --- a/app/img/nodes/unspecified-entity.svg +++ b/app/img/nodes/unspecified-entity.svg @@ -2,22 +2,22 @@ + inkscape:export-ydpi="300" + xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" + xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" + xmlns="http://www.w3.org/2000/svg" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + fit-margin-bottom="0" + inkscape:showpageshadow="2" + inkscape:pagecheckerboard="0" + inkscape:deskcolor="#d1d1d1" /> @@ -191,7 +194,7 @@ image/svg+xml - + @@ -201,14 +204,14 @@ id="layer1" transform="translate(-6.5142826,-255.27521)"> + rx="27.818542" + ry="21.818541" /> diff --git a/app/img/sbml-legend.svg b/app/img/sbml-legend.svg index caf0add14..3643ac3b9 100644 --- a/app/img/sbml-legend.svg +++ b/app/img/sbml-legend.svg @@ -24,9 +24,9 @@ inkscape:deskcolor="#d1d1d1" inkscape:document-units="mm" showgrid="false" - inkscape:zoom="0.6070643" - inkscape:cx="403.58163" - inkscape:cy="538.65793" + inkscape:zoom="0.45859254" + inkscape:cx="317.27511" + inkscape:cy="455.74226" inkscape:window-width="1440" inkscape:window-height="847" inkscape:window-x="0" @@ -2144,31 +2144,7 @@ sodipodi:nodetypes="ccccccc" inkscape:export-filename="C:\Users\ugur\Google Drive\toolbar\phenotype.png" inkscape:export-xdpi="54" - inkscape:export-ydpi="54" /> + id="path2-35" /> diff --git a/package.json b/package.json index 0a2a91628..6da8b8630 100644 --- a/package.json +++ b/package.json @@ -54,7 +54,7 @@ "natives": "^1.1.6", "nodemailer": "6.4.5", "request": "^2.81.0", - "sbgnviz": "github:iVis-at-Bilkent/sbgnviz.js#unstable", + "sbgnviz": "github:umut-er/sbgnviz.js#unstable", "tippy.js": "^3.4.0" }, "devDependencies": {