diff --git a/NAMESPACE b/NAMESPACE index f34a9c3..64656e5 100755 --- a/NAMESPACE +++ b/NAMESPACE @@ -121,10 +121,13 @@ importFrom(lme4,lmer) importFrom(ordinal,clm) importFrom(ordinal,clmm) importFrom(plot3D,scatter3D) +importFrom(plotrix,draw.circle) importFrom(plotrix,draw.ellipse) importFrom(reshape,melt) importFrom(rhdf5,H5Fclose) importFrom(rhdf5,H5Fopen) +importFrom(rmarkdown,html_document) +importFrom(rmarkdown,pandoc_available) importFrom(rmarkdown,render) importFrom(stats,IQR) importFrom(stats,aggregate) @@ -152,6 +155,8 @@ importFrom(stats,pt) importFrom(stats,qnorm) importFrom(stats,quantile) importFrom(stats,sd) +importFrom(stats,splinefun) importFrom(umap,umap) +importFrom(umap,umap.defaults) importFrom(utils,read.delim) importFrom(utils,write.table) diff --git a/NetBID2_0.1.2.pdf b/NetBID2_0.1.2.pdf index 1f31585..ec18dc4 100755 Binary files a/NetBID2_0.1.2.pdf and b/NetBID2_0.1.2.pdf differ diff --git a/README.md b/README.md index ccad1db..649775b 100755 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ # NetBID2 -Network-based Bayesian Inference of Drivers, Version II +data-drivern Network-based Bayesian Inference of Drivers, Version II # Version 0.1.2 Update Notes: diff --git a/inst/COPYRIGHT.txt b/inst/COPYRIGHT.txt new file mode 100755 index 0000000..cb671ec --- /dev/null +++ b/inst/COPYRIGHT.txt @@ -0,0 +1,13 @@ +Copyright 2018 St. Jude Children’s Research Hospital, Inc. + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License.