From e1ff31175a9239b01b6ea5d585295fff5de4d3e3 Mon Sep 17 00:00:00 2001 From: Kai Norman Clasen <46302524+kai-tub@users.noreply.github.com> Date: Tue, 18 Oct 2022 21:37:50 +0200 Subject: [PATCH] Allow optional setting of tags + add hide-X commands + code-prompt-show/hide (#13) * Allow optional setting of tags * Add `hide-X` commands even though they are missing from the official documentation table * Add `code-prompt-show/hide` values even though they aren't really useful for the classic purpose * Fix upper bound because of pandas-stubs limit... --- common_nb_preprocessors/_constant_builder.py | 4 +- common_nb_preprocessors/myst_nb.py | 84 +- docs/conf.py | 2 +- docs/usage.ipynb | 158 ++ pdm.lock | 1592 ++++++++++-------- pyproject.toml | 3 +- tests/test_mystnb.py | 33 + 7 files changed, 1117 insertions(+), 759 deletions(-) diff --git a/common_nb_preprocessors/_constant_builder.py b/common_nb_preprocessors/_constant_builder.py index dec2667..ec6e2e1 100644 --- a/common_nb_preprocessors/_constant_builder.py +++ b/common_nb_preprocessors/_constant_builder.py @@ -1,12 +1,14 @@ try: + # TODO: check set html5lib as dependency import bs4 # type: ignore import html5lib # type: ignore + import lxml # type: ignore import pandas except ImportError: raise ImportError( """\ This module is only used during development and requires - pandas + the `read_html` dependencies (bs4 and html5lib). + pandas + the `read_html` dependencies (bs4, html5lib, and lxml). """ ) diff --git a/common_nb_preprocessors/myst_nb.py b/common_nb_preprocessors/myst_nb.py index 043271e..6081685 100644 --- a/common_nb_preprocessors/myst_nb.py +++ b/common_nb_preprocessors/myst_nb.py @@ -1,6 +1,8 @@ from enum import Enum +from typing import List, Optional import nbformat +from pydantic import validate_arguments from .metadata_injector import ( MetaDataListInjectorPreprocessor, @@ -19,6 +21,21 @@ class MystNBCellTags(str, Enum): All different Myst-NB cell tag configuration options. """ + hide_input = "hide-input" + """ + Hide the source code of the cell behind a collapsible button. + See :ref:`sec/hide-input` for a visual example. + """ + hide_output = "hide-output" + """ + Hide the output of the cell behind a collapsible button. + See :ref:`sec/hide-output` for a visual example. + """ + hide_cell = "hide-cell" + """ + Hide the input as well as the output of the cell behind a collapsible button. + See :ref:`sec/hide-cell` for a visual example. + """ remove_input = "remove-input" """ Removes the source code of the cell. @@ -69,7 +86,8 @@ def _validate(cls) -> None: cell_tags = _myst_nb_cell_tags["Tag"].tolist() _nbclient_cell_tags = _read_unique_myst_nb_table(match="skip-execution") cell_tags.extend(_nbclient_cell_tags["Tag"].tolist()) - if set(cell_tags) != set(cls): + # if some aren't documented yet, which has happened quite often + if set(cell_tags) - set(cls) != set(): raise RuntimeError(f"{cls} out-of-date!") @@ -112,6 +130,28 @@ class MystNBCellConf(str, Enum): See :ref:`sec/output_stderr` for a visual example. """ + code_prompt_show = "code_prompt_show" + """ + Define the prompt *text* that is displayed next to the + *expand/show* dialog. The text is displayed to inform the user + that the dialog can be expanded. + + The optional `{type}` placeholder will be replaced with: + `content`, `source`, or `outputs`, depending on the `hide` tag. + + See :ref:`sec/code_prompt_show` for a visual example. + """ + code_prompt_hide = "code_prompt_hide" + """ + Define the prompt *text* that is displayed next to the + *hide* dialog. The text is displayed to inform the user + that the dialog can be *collapsed/minimized*. + + The optional `{type}` placeholder will be replaced with: + `content`, `source`, or `outputs`, depending on the `hide` tag. + + See :ref:`sec/code_prompt_hide` for a visual example. + """ merge_streams = "merge_streams" """ @@ -186,35 +226,14 @@ def _validate(cls) -> None: raise RuntimeError(f"{cls} out-of-date!") -# MYST_NB_CELL_CONF = [ -# "merge_streams", -# "remove_code_source", -# "remove_code_outputs", -# "number_source_lines", -# "output_stderr", -# "text_lexer", -# "error_lexer", -# "image", -# "figure", -# "markdown_format", -# ] - -# JUPYTER_BOOK_CODE_TAGS = [ -# "full-width", -# "output_scroll", -# "margin", -# "hide-input", -# "hide-output", -# "hide-cell", -# "remove-input", -# "remove-output", -# "remove-cell", -# "raises-exception", -# ] - - +@validate_arguments() def myst_nb_metadata_injector( - file_content: str, prefix: str = "#", remove_line: bool = True, delimiter: str = "=" + file_content: str, + /, + prefix: str = "#", + remove_line: bool = True, + delimiter: str = "=", + extra_tags: Optional[List[str]] = None, ) -> nbformat.NotebookNode: """ The preprocessor will inject all the MyST-NB specific tags into the @@ -225,16 +244,21 @@ def myst_nb_metadata_injector( :param file_content: contents of an `ipynb` file :param prefix: Comment symbol that precedes the keys. Defaults to `#`. :param remove_line: Set if the metadata comment lines should be removed after injection. Defaults to `True`. + :param extra_tags: Additional custom `tags` list for further customization. Internally it calls `MetaDataListInjectorPrepreprocessor` and `MetaDataMapInjectorPreprocessor`. Refer to those classes for more details. """ nb = nbformat.reads(file_content, as_version=4) + metadata_tags = set(s.value for s in MystNBCellTags) + if extra_tags is not None: + metadata_tags = metadata_tags | set(extra_tags) + # could be done in one preprocess step nb, _ = MetaDataListInjectorPreprocessor( metadata_group="tags", - strings=list(MystNBCellTags), + strings=list(metadata_tags), prefix=prefix, remove_line=remove_line, ).preprocess(nb, None) diff --git a/docs/conf.py b/docs/conf.py index c739c63..aa0c245 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -65,7 +65,7 @@ nb_custom_formats = { ".ipynb": [ "common_nb_preprocessors.myst_nb_metadata_injector", - {"prefix": "#", "delimiter": "="}, + {"prefix": "#", "delimiter": "=", "extra_tags": []}, ] } # enable-end diff --git a/docs/usage.ipynb b/docs/usage.ipynb index 869a75a..1c48f1e 100644 --- a/docs/usage.ipynb +++ b/docs/usage.ipynb @@ -77,6 +77,7 @@ "Usually, this should be comment symbol(s) of the programming language.\n", "By default, and used in the example above, the `prefix=#` as this is the comment symbol for the Python programming language.\n", "The `delimiter` may be a character/string of your choice and will be used for separating key-value pairs.\n", + "If you would like to add _additional_ [tags](sec/tags-conf) (when writing custom CSS rules, for example), you can also specify these as a list of strings in the `extra_tags` option.\n", "\n", "To see a list of all possible configuration, see the [API documentation of mystnb_nb_metadata_injector](myst_nb_metadata_injector).\n", "\n", @@ -171,9 +172,12 @@ "metadata": {}, "source": [ "- [](sec/remove-input)\n", + "- [](sec/hide-input)\n", "- [](sec/remove-stderr)\n", "- [](sec/remove-output)\n", + "- [](sec/hide-output)\n", "- [](sec/remove-cell)\n", + "- [](sec/hide-cell)\n", "- [](sec/skip-execution)\n", "- [](sec/raises-exception)" ] @@ -263,6 +267,34 @@ "print(\"My code cell is removed\")" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "(sec/hide-input)=\n", + "### hide-input\n", + "\n", + "Hide the source code of the cell behind a collapsible button.\n", + "Useful if you want to draw the attention of the reader away from the code but still allow them to view the code if interested.\n", + "\n", + "Source:\n", + "\n", + "```python\n", + "# hide-input\n", + "print(\"My code cell is hidden behind a collapsible button.\")\n", + "```" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# hide-input\n", + "print(\"My code cell is hidden behind a collapsible button.\")" + ] + }, { "cell_type": "markdown", "metadata": {}, @@ -351,6 +383,33 @@ "print(\"including the error output\", file=sys.stderr)" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "(sec/hide-output)=\n", + "### hide-output\n", + "\n", + "Hide the output of the code cell behind a collapsible button.\n", + "This affects the entire output (`stderr` and `stdout`, like [](sec/remove-output)).\n", + "\n", + "Source:\n", + "```python\n", + "# hide-output\n", + "print(\"My output is hidden behind a collapsible button.\")\n", + "```" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# hide-output\n", + "print(\"My output is hidden behind a collapsible button.\")" + ] + }, { "cell_type": "markdown", "metadata": {}, @@ -400,6 +459,32 @@ "```" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "(sec/hide-cell)=\n", + "### hide-cell\n", + "\n", + "Hide the input as well as the output of the code cell behind a collapsible button.\n", + "\n", + "Source:\n", + "```python\n", + "# hide-cell\n", + "print(\"The input and output is hidden behind a collapsible button.\")\n", + "```" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# hide-cell\n", + "print(\"The input and output is hidden behind a collapsible button.\")" + ] + }, { "cell_type": "markdown", "metadata": {}, @@ -487,6 +572,8 @@ "\n", "- [](sec/remove_code_source)\n", "- [](sec/remove_code_outputs)\n", + "- [](sec/code_prompt_show)\n", + "- [](sec/code_prompt_hide)\n", "- [](sec/number_source_lines)\n", "- [](sec/output_stderr)\n", "- [](sec/merge_streams)\n", @@ -579,6 +666,77 @@ "print(\"including the error output\", file=sys.stderr)" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "(sec/code_prompt_show)=\n", + "### code_prompt_show\n", + "Prompt _text_ that is displayed to inform the user that the dialog can be _expanded_.\n", + "The optional `{type}` placeholder will be replaced with `content`, `source`, or `outputs`, depending on the `hide` tag ([](sec/hide-input), [](sec/hide-output), [](sec/hide-cell)).\n", + "\n", + ":::{note}\n", + "Also requires the code cell to specify one of the `hide-X` options.\n", + ":::\n", + "\n", + "Mainly included for completeness.\n", + "This would be an ideal example of a configuration value that should be set globally instead of individually within each code cell.\n", + "\n", + "\n", + "Source:\n", + "```python\n", + "# hide-input\n", + "# code_prompt_show = \"Click here to see my absolutely awesome {type}\"\n", + "print(\"Setting code_prompt_show\")\n", + "```" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# hide-input\n", + "# code_prompt_show = \"Click here to see my absolutely awesome {type}\"\n", + "print(\"Setting code_prompt_show\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "(sec/code_prompt_hide)=\n", + "### code_prompt_hide\n", + "Prompt _text_ that is displayed to inform the user that the dialog can be _collapsed/minimized_.\n", + "The optional `{type}` placeholder will be replaced with `content`, `source`, or `outputs`, depending on the `hide` tag ([](sec/hide-input), [](sec/hide-output), [](sec/hide-cell)).\n", + "\n", + ":::{note}\n", + "Also requires the code cell to specify one of the `hide-X` options.\n", + ":::\n", + "\n", + "Mainly included for completeness.\n", + "This would be an ideal example of a configuration value that should be set globally instead of individually within each code cell.\n", + "\n", + "Source:\n", + "```python\n", + "# hide-input\n", + "# code_prompt_hide = \"Click here to minimize my absolutely awesome {type} (What is wrong with it?! :( )\"\n", + "print(\"Expand the button above to see the text!\")\n", + "```" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# hide-input\n", + "# code_prompt_hide = \"Click here to minimize my awesome {type} (What is wrong with it?! 🥲)\"\n", + "print(\"Expand the button above to see the hide prompt!\")" + ] + }, { "cell_type": "markdown", "metadata": {}, diff --git a/pdm.lock b/pdm.lock index 14868ef..04533dd 100644 --- a/pdm.lock +++ b/pdm.lock @@ -3,6 +3,16 @@ name = "alabaster" version = "0.7.12" summary = "A configurable sidebar-enabled Sphinx theme" +[[package]] +name = "anyio" +version = "3.6.1" +requires_python = ">=3.6.2" +summary = "High level compatibility layer for multiple asynchronous event loop implementations" +dependencies = [ + "idna>=2.8", + "sniffio>=1.1", +] + [[package]] name = "appnope" version = "0.1.3" @@ -28,22 +38,16 @@ dependencies = [ [[package]] name = "asttokens" -version = "2.0.5" +version = "2.0.8" summary = "Annotate AST trees with source code positions" dependencies = [ "six", ] -[[package]] -name = "atomicwrites" -version = "1.4.1" -requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -summary = "Atomic file writes." - [[package]] name = "attrs" -version = "21.4.0" -requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "22.1.0" +requires_python = ">=3.5" summary = "Classes Without Boilerplate" [[package]] @@ -71,8 +75,8 @@ dependencies = [ [[package]] name = "black" -version = "22.6.0" -requires_python = ">=3.6.2" +version = "22.10.0" +requires_python = ">=3.7" summary = "The uncompromising code formatter." dependencies = [ "click>=8.0.0", @@ -85,12 +89,12 @@ dependencies = [ [[package]] name = "black" -version = "22.6.0" +version = "22.10.0" extras = ["jupyter"] -requires_python = ">=3.6.2" +requires_python = ">=3.7" summary = "The uncompromising code formatter." dependencies = [ - "black==22.6.0", + "black==22.10.0", "ipython>=7.8.0", "tokenize-rt>=3.2.0", ] @@ -107,7 +111,7 @@ dependencies = [ [[package]] name = "certifi" -version = "2022.6.15" +version = "2022.9.24" requires_python = ">=3.6" summary = "Python package for providing Mozilla's CA Bundle." @@ -127,7 +131,7 @@ summary = "Validate configuration and produce human readable error messages." [[package]] name = "charset-normalizer" -version = "2.1.0" +version = "2.1.1" requires_python = ">=3.6.0" summary = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." @@ -153,13 +157,13 @@ summary = "Python parser for the CommonMark Markdown spec" [[package]] name = "coverage" -version = "6.4.2" +version = "6.5.0" requires_python = ">=3.7" summary = "Code coverage measurement for Python" [[package]] name = "debugpy" -version = "1.6.2" +version = "1.6.3" requires_python = ">=3.7" summary = "An implementation of the Debug Adapter Protocol for Python" @@ -177,7 +181,7 @@ summary = "XML bomb protection for Python stdlib modules" [[package]] name = "distlib" -version = "0.3.4" +version = "0.3.6" summary = "Distribution utilities" [[package]] @@ -194,41 +198,41 @@ summary = "Discover and load entry points from installed packages." [[package]] name = "exceptiongroup" -version = "1.0.0rc8" +version = "1.0.0rc9" requires_python = ">=3.7" summary = "Backport of PEP 654 (exception groups)" [[package]] name = "executing" -version = "0.8.3" +version = "1.1.1" summary = "Get the currently executing AST node of a frame, and other information" [[package]] name = "fastjsonschema" -version = "2.15.3" +version = "2.16.2" summary = "Fastest Python implementation of JSON schema" [[package]] name = "filelock" -version = "3.7.1" +version = "3.8.0" requires_python = ">=3.7" summary = "A platform independent file lock." [[package]] name = "furo" -version = "2022.6.21" +version = "2022.9.29" requires_python = ">=3.7" summary = "A clean customisable Sphinx documentation theme." dependencies = [ "beautifulsoup4", - "pygments", + "pygments>=2.7", "sphinx-basic-ng", "sphinx<6.0,>=4.0", ] [[package]] name = "greenlet" -version = "1.1.2" +version = "1.1.3.post0" requires_python = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" summary = "Lightweight in-process concurrent programming" @@ -244,7 +248,7 @@ dependencies = [ [[package]] name = "hypothesis" -version = "6.52.3" +version = "6.56.3" requires_python = ">=3.7" summary = "A library for property-based testing" dependencies = [ @@ -255,13 +259,13 @@ dependencies = [ [[package]] name = "identify" -version = "2.5.1" +version = "2.5.6" requires_python = ">=3.7" summary = "File identification library for Python" [[package]] name = "idna" -version = "3.3" +version = "3.4" requires_python = ">=3.5" summary = "Internationalized Domain Names in Applications (IDNA)" @@ -273,7 +277,7 @@ summary = "Getting image size from png/jpeg/jpeg2000/gif file" [[package]] name = "importlib-metadata" -version = "4.12.0" +version = "5.0.0" requires_python = ">=3.7" summary = "Read metadata from Python packages" dependencies = [ @@ -282,7 +286,7 @@ dependencies = [ [[package]] name = "importlib-resources" -version = "5.8.0" +version = "5.10.0" requires_python = ">=3.7" summary = "Read resources from Python packages" dependencies = [ @@ -296,7 +300,7 @@ summary = "iniconfig: brain-dead simple config-ini parsing" [[package]] name = "ipykernel" -version = "6.15.1" +version = "6.16.0" requires_python = ">=3.7" summary = "IPython Kernel for Jupyter" dependencies = [ @@ -315,7 +319,7 @@ dependencies = [ [[package]] name = "ipython" -version = "8.4.0" +version = "8.5.0" requires_python = ">=3.8" summary = "IPython: Productive Interactive Computing" dependencies = [ @@ -327,9 +331,8 @@ dependencies = [ "matplotlib-inline", "pexpect>4.3; sys_platform != \"win32\"", "pickleshare", - "prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0", + "prompt-toolkit<3.1.0,>3.0.1", "pygments>=2.4.0", - "setuptools>=18.5", "stack-data", "traitlets>=5", ] @@ -341,15 +344,15 @@ summary = "Vestigial utilities from IPython" [[package]] name = "ipywidgets" -version = "7.7.1" -summary = "IPython HTML widgets for Jupyter" +version = "8.0.2" +requires_python = ">=3.7" +summary = "Jupyter interactive widgets" dependencies = [ "ipykernel>=4.5.1", - "ipython-genutils~=0.2.0", - "ipython>=4.0.0; python_version >= \"3.3\"", - "jupyterlab-widgets>=1.0.0; python_version >= \"3.6\"", + "ipython>=6.1.0", + "jupyterlab-widgets~=3.0", "traitlets>=4.3.1", - "widgetsnbextension~=3.6.0", + "widgetsnbextension~=4.0", ] [[package]] @@ -378,12 +381,13 @@ dependencies = [ [[package]] name = "jsonschema" -version = "4.6.2" +version = "4.16.0" requires_python = ">=3.7" summary = "An implementation of JSON Schema validation for Python" dependencies = [ "attrs>=17.4.0", "importlib-resources>=1.4.0; python_version < \"3.9\"", + "pkgutil-resolve-name>=1.3.10; python_version < \"3.9\"", "pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0", ] @@ -437,7 +441,7 @@ dependencies = [ [[package]] name = "jupyter-client" -version = "7.3.4" +version = "7.4.2" requires_python = ">=3.7" summary = "Jupyter protocol implementation and client libraries" dependencies = [ @@ -446,7 +450,7 @@ dependencies = [ "nest-asyncio>=1.5.4", "python-dateutil>=2.8.2", "pyzmq>=23.0", - "tornado>=6.0", + "tornado>=6.2", "traitlets", ] @@ -473,6 +477,30 @@ dependencies = [ "traitlets", ] +[[package]] +name = "jupyter-server" +version = "1.21.0" +requires_python = ">=3.7" +summary = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." +dependencies = [ + "Send2Trash", + "anyio<4,>=3.1.0", + "argon2-cffi", + "jinja2", + "jupyter-client>=6.1.12", + "jupyter-core>=4.7.0", + "nbconvert>=6.4.4", + "nbformat>=5.2.0", + "packaging", + "prometheus-client", + "pywinpty; os_name == \"nt\"", + "pyzmq>=17", + "terminado>=0.8.3", + "tornado>=6.1.0", + "traitlets>=5.1", + "websocket-client", +] + [[package]] name = "jupyterlab-pygments" version = "0.2.2" @@ -481,13 +509,13 @@ summary = "Pygments theme using JupyterLab CSS variables" [[package]] name = "jupyterlab-widgets" -version = "1.1.1" -requires_python = ">=3.6" -summary = "A JupyterLab extension." +version = "3.0.3" +requires_python = ">=3.7" +summary = "Jupyter interactive widgets for JupyterLab" [[package]] name = "jupytext" -version = "1.14.0" +version = "1.14.1" requires_python = "~=3.6" summary = "Jupyter notebooks as Markdown documents, Julia, Python or R scripts" dependencies = [ @@ -547,7 +575,7 @@ summary = "Safely add untrusted strings to HTML/XML markup." [[package]] name = "matplotlib-inline" -version = "0.1.3" +version = "0.1.6" requires_python = ">=3.5" summary = "Inline Matplotlib backend for Jupyter" dependencies = [ @@ -556,8 +584,8 @@ dependencies = [ [[package]] name = "mdit-py-plugins" -version = "0.3.0" -requires_python = "~=3.6" +version = "0.3.1" +requires_python = ">=3.7" summary = "Collection of plugins for markdown-it-py" dependencies = [ "markdown-it-py<3.0.0,>=1.0.0", @@ -565,19 +593,19 @@ dependencies = [ [[package]] name = "mdurl" -version = "0.1.1" +version = "0.1.2" requires_python = ">=3.7" summary = "Markdown URL utilities" [[package]] name = "mistune" -version = "0.8.4" -summary = "The fastest markdown parser in pure Python" +version = "2.0.4" +summary = "A sane Markdown parser with useful plugins and renderers" [[package]] name = "mypy" -version = "0.971" -requires_python = ">=3.6" +version = "0.982" +requires_python = ">=3.7" summary = "Optional static typing for Python" dependencies = [ "mypy-extensions>=0.4.3", @@ -592,7 +620,7 @@ summary = "Experimental type system extensions for programs checked with the myp [[package]] name = "myst-nb" -version = "0.16.0" +version = "0.17.1" requires_python = ">=3.7" summary = "A Jupyter Notebook Sphinx reader built on top of the MyST markdown parser." dependencies = [ @@ -604,26 +632,50 @@ dependencies = [ "nbclient", "nbformat~=5.0", "pyyaml", - "sphinx-togglebutton~=0.3.0", "sphinx<6,>=4", "typing-extensions", ] [[package]] name = "myst-parser" -version = "0.18.0" +version = "0.18.1" requires_python = ">=3.7" summary = "An extended commonmark compliant parser, with bridges to docutils & sphinx." dependencies = [ - "docutils<0.19,>=0.15", + "docutils<0.20,>=0.15", "jinja2", "markdown-it-py<3.0.0,>=1.0.0", - "mdit-py-plugins~=0.3.0", + "mdit-py-plugins~=0.3.1", "pyyaml", "sphinx<6,>=4", "typing-extensions", ] +[[package]] +name = "nbclassic" +version = "0.4.5" +requires_python = ">=3.7" +summary = "A web-based notebook environment for interactive computing" +dependencies = [ + "Send2Trash>=1.8.0", + "argon2-cffi", + "ipykernel", + "ipython-genutils", + "jinja2", + "jupyter-client>=6.1.1", + "jupyter-core>=4.6.1", + "jupyter-server>=1.8", + "nbconvert>=5", + "nbformat", + "nest-asyncio>=1.5", + "notebook-shim>=0.1.0", + "prometheus-client", + "pyzmq>=17", + "terminado>=0.8.3", + "tornado>=6.1", + "traitlets>=4.2.1", +] + [[package]] name = "nbclient" version = "0.5.13" @@ -638,19 +690,19 @@ dependencies = [ [[package]] name = "nbconvert" -version = "6.5.0" +version = "7.2.1" requires_python = ">=3.7" summary = "Converting Jupyter Notebooks" dependencies = [ - "MarkupSafe>=2.0", "beautifulsoup4", "bleach", "defusedxml", - "entrypoints>=0.2.2", + "importlib-metadata>=3.6; python_version < \"3.10\"", "jinja2>=3.0", "jupyter-core>=4.7", "jupyterlab-pygments", - "mistune<2,>=0.8.1", + "markupsafe>=2.0", + "mistune<3,>=2.0.3", "nbclient>=0.5.0", "nbformat>=5.1", "packaging", @@ -662,7 +714,7 @@ dependencies = [ [[package]] name = "nbformat" -version = "5.4.0" +version = "5.7.0" requires_python = ">=3.7" summary = "The Jupyter Notebook format" dependencies = [ @@ -674,8 +726,8 @@ dependencies = [ [[package]] name = "nbstripout" -version = "0.5.0" -requires_python = ">=3.5" +version = "0.6.1" +requires_python = ">=3.6" summary = "Strips outputs from Jupyter and IPython notebooks" dependencies = [ "nbformat", @@ -683,7 +735,7 @@ dependencies = [ [[package]] name = "nest-asyncio" -version = "1.5.5" +version = "1.5.6" requires_python = ">=3.5" summary = "Patch asyncio to allow nested event loops" @@ -698,7 +750,7 @@ dependencies = [ [[package]] name = "notebook" -version = "6.4.12" +version = "6.5.1" requires_python = ">=3.7" summary = "A web-based notebook environment for interactive computing" dependencies = [ @@ -709,6 +761,7 @@ dependencies = [ "jinja2", "jupyter-client>=5.3.4", "jupyter-core>=4.6.1", + "nbclassic==0.4.5", "nbconvert>=5", "nbformat", "nest-asyncio>=1.5", @@ -719,9 +772,18 @@ dependencies = [ "traitlets>=4.2.1", ] +[[package]] +name = "notebook-shim" +version = "0.2.0" +requires_python = ">=3.7" +summary = "A shim layer for notebook traits and config" +dependencies = [ + "jupyter-server<3,>=1.8", +] + [[package]] name = "numpy" -version = "1.23.1" +version = "1.23.4" requires_python = ">=3.8" summary = "NumPy is the fundamental package for array computing with Python." @@ -736,13 +798,11 @@ dependencies = [ [[package]] name = "pandas" -version = "1.4.3" +version = "1.5.0" requires_python = ">=3.8" summary = "Powerful data structures for data analysis, time series, and statistics" dependencies = [ - "numpy>=1.18.5; platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\"", - "numpy>=1.19.2; platform_machine == \"aarch64\" and python_version < \"3.10\"", - "numpy>=1.20.0; platform_machine == \"arm64\" and python_version < \"3.10\"", + "numpy>=1.20.3; python_version < \"3.10\"", "numpy>=1.21.0; python_version >= \"3.10\"", "python-dateutil>=2.8.1", "pytz>=2020.1", @@ -750,7 +810,7 @@ dependencies = [ [[package]] name = "pandas-stubs" -version = "1.4.3.220718" +version = "1.5.0.221012" requires_python = ">=3.8,<3.11" summary = "Type annotations for pandas" dependencies = [ @@ -771,8 +831,8 @@ summary = "A Python Parser" [[package]] name = "pathspec" -version = "0.9.0" -requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +version = "0.10.1" +requires_python = ">=3.7" summary = "Utility library for gitignore style pattern matching of file paths." [[package]] @@ -788,6 +848,12 @@ name = "pickleshare" version = "0.7.5" summary = "Tiny 'shelve'-like database with concurrency support" +[[package]] +name = "pkgutil-resolve-name" +version = "1.3.10" +requires_python = ">=3.6" +summary = "Resolve a name to an object." + [[package]] name = "platformdirs" version = "2.5.2" @@ -816,13 +882,13 @@ dependencies = [ [[package]] name = "prometheus-client" -version = "0.14.1" +version = "0.15.0" requires_python = ">=3.6" summary = "Python client for the Prometheus monitoring system." [[package]] name = "prompt-toolkit" -version = "3.0.30" +version = "3.0.31" requires_python = ">=3.6.2" summary = "Library for building powerful interactive command lines in Python" dependencies = [ @@ -831,7 +897,7 @@ dependencies = [ [[package]] name = "psutil" -version = "5.9.1" +version = "5.9.2" requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" summary = "Cross-platform lib for process and system monitoring in Python." @@ -859,16 +925,16 @@ summary = "C parser in Python" [[package]] name = "pydantic" -version = "1.9.1" -requires_python = ">=3.6.1" +version = "1.10.2" +requires_python = ">=3.7" summary = "Data validation and settings management using python type hints" dependencies = [ - "typing-extensions>=3.7.4.3", + "typing-extensions>=4.1.0", ] [[package]] name = "pygments" -version = "2.12.0" +version = "2.13.0" requires_python = ">=3.6" summary = "Pygments is a syntax highlighting package written in Python." @@ -886,11 +952,10 @@ summary = "Persistent/Functional/Immutable data structures" [[package]] name = "pytest" -version = "7.1.2" +version = "7.1.3" requires_python = ">=3.7" summary = "pytest: simple powerful testing with Python" dependencies = [ - "atomicwrites>=1.0; sys_platform == \"win32\"", "attrs>=19.2.0", "colorama; sys_platform == \"win32\"", "iniconfig", @@ -911,7 +976,7 @@ dependencies = [ [[package]] name = "pytz" -version = "2022.1" +version = "2022.5" summary = "World timezone definitions, modern and historical" [[package]] @@ -921,7 +986,7 @@ summary = "Python for Window Extensions" [[package]] name = "pywinpty" -version = "2.0.6" +version = "2.0.8" requires_python = ">=3.7" summary = "Pseudo terminal support for Windows from Python." @@ -933,7 +998,7 @@ summary = "YAML parser and emitter for Python" [[package]] name = "pyzmq" -version = "23.2.0" +version = "24.0.1" requires_python = ">=3.6" summary = "Python bindings for 0MQ" dependencies = [ @@ -943,7 +1008,7 @@ dependencies = [ [[package]] name = "qtconsole" -version = "5.3.1" +version = "5.3.2" requires_python = ">= 3.7" summary = "Jupyter Qt console" dependencies = [ @@ -959,7 +1024,7 @@ dependencies = [ [[package]] name = "qtpy" -version = "2.1.0" +version = "2.2.1" requires_python = ">=3.7" summary = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." dependencies = [ @@ -980,7 +1045,7 @@ dependencies = [ [[package]] name = "rich" -version = "12.5.1" +version = "12.6.0" requires_python = ">=3.6.3,<4.0.0" summary = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" dependencies = [ @@ -1011,7 +1076,7 @@ summary = "Send file to trash natively under Mac OS X, Windows and Linux." [[package]] name = "setuptools" -version = "63.1.0" +version = "65.5.0" requires_python = ">=3.7" summary = "Easily download, build, install, upgrade, and uninstall Python packages" @@ -1021,6 +1086,12 @@ version = "1.16.0" requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" summary = "Python 2 and 3 compatibility utilities" +[[package]] +name = "sniffio" +version = "1.3.0" +requires_python = ">=3.7" +summary = "Sniff out which async library your code is running under" + [[package]] name = "snowballstemmer" version = "2.2.0" @@ -1075,16 +1146,16 @@ dependencies = [ [[package]] name = "sphinx-basic-ng" -version = "0.0.1a12" +version = "1.0.0b1" requires_python = ">=3.7" summary = "A modern skeleton for Sphinx themes." dependencies = [ - "sphinx<6.0,>=4.0", + "sphinx>=4.0", ] [[package]] name = "sphinx-design" -version = "0.2.0" +version = "0.3.0" requires_python = ">=3.7" summary = "A sphinx extension for designing beautiful, view size responsive web components." dependencies = [ @@ -1102,17 +1173,6 @@ dependencies = [ "sphinx<5,>=3", ] -[[package]] -name = "sphinx-togglebutton" -version = "0.3.1" -summary = "Toggle page content and collapse admonitions in Sphinx." -dependencies = [ - "docutils", - "setuptools", - "sphinx", - "wheel", -] - [[package]] name = "sphinxcontrib-applehelp" version = "1.0.2" @@ -1151,7 +1211,7 @@ summary = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"s [[package]] name = "sqlalchemy" -version = "1.4.39" +version = "1.4.42" requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" summary = "Database Abstraction Library" dependencies = [ @@ -1160,7 +1220,7 @@ dependencies = [ [[package]] name = "stack-data" -version = "0.3.0" +version = "0.5.1" summary = "Extract data from python stack frames and tracebacks for informative displays" dependencies = [ "asttokens", @@ -1170,13 +1230,13 @@ dependencies = [ [[package]] name = "tabulate" -version = "0.8.10" -requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.9.0" +requires_python = ">=3.7" summary = "Pretty-print tabular data" [[package]] name = "terminado" -version = "0.15.0" +version = "0.16.0" requires_python = ">=3.7" summary = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." dependencies = [ @@ -1187,8 +1247,8 @@ dependencies = [ [[package]] name = "tinycss2" -version = "1.1.1" -requires_python = ">=3.6" +version = "1.2.1" +requires_python = ">=3.7" summary = "A tiny CSS parser" dependencies = [ "webencodings>=0.4", @@ -1220,7 +1280,7 @@ summary = "Tornado is a Python web framework and asynchronous networking library [[package]] name = "tqdm" -version = "4.64.0" +version = "4.64.1" requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" summary = "Fast, Extensible Progress Meter" dependencies = [ @@ -1229,23 +1289,23 @@ dependencies = [ [[package]] name = "traitlets" -version = "5.3.0" +version = "5.5.0" requires_python = ">=3.7" summary = "" [[package]] name = "types-pytz" -version = "2022.1.2" +version = "2022.4.0.0" summary = "Typing stubs for pytz" [[package]] name = "types-pyyaml" -version = "6.0.10" +version = "6.0.12" summary = "Typing stubs for PyYAML" [[package]] name = "typing-extensions" -version = "4.3.0" +version = "4.4.0" requires_python = ">=3.7" summary = "Backported and Experimental Type Hints for Python 3.7+" @@ -1257,20 +1317,19 @@ summary = "Micro subset of unicode data files for linkify-it-py projects." [[package]] name = "urllib3" -version = "1.26.10" +version = "1.26.12" requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4" summary = "HTTP library with thread-safe connection pooling, file post, and more." 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a/tests/test_mystnb.py +++ b/tests/test_mystnb.py @@ -1,3 +1,5 @@ +from typing import List, Union + import nbformat import pytest @@ -46,6 +48,37 @@ def test_myst_nb_metadata_injector(prefix: str, remove_line: bool, delimiter: st assert len_source_lines == 4 +# test extra tags configurator +@pytest.mark.parametrize( + "inp_tags,extra_tags", + [ + (["tag_inp1"], None), + (["tag_inp1", "tag_inp2"], None), + (["tag_inp1"], ["tag_inp1"]), + (["tag-inp1", "tag-inp2"], ["tag-inp1", "tag-inp2"]), + ], +) +def test_myst_nb_metadata_injector_extra_tags( + inp_tags: List[str], extra_tags: Union[List[str], None] +): + # assumption: extra_tags always matches inp for all if not None + nb = nbformat.v4.new_notebook() + src_tmpl = """\ + # {inp_tag} + code line + """ + src_txt = "\n".join(src_tmpl.format(inp_tag=inp_tag) for inp_tag in inp_tags) + nb.cells.append(nbformat.v4.new_code_cell(src_txt)) + new_nb = myst_nb_metadata_injector( + nbformat.writes(nb), prefix="#", remove_line=True, extra_tags=extra_tags + ) + if extra_tags is not None: + assert new_nb.cells[0].metadata.hasattr("tags") + assert set(new_nb.cells[0].metadata.tags) == set(extra_tags) + else: + assert not new_nb.cells[0].metadata.hasattr("tags") + + def test_myst_nb_metadata_injector_syntax_sugar(): nb = nbformat.v4.new_notebook() src = f"""\