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@article{Guerrero-Bosagna2012,
author = {Guerrero-Bosagna, Carlos},
doi = {10.1007/s11692-012-9163-x},
issn = {0071-3260},
journal = {Evolutionary Biology},
month = mar,
title = {{Finalism in Darwinian and Lamarckian Evolution: Lessons from Epigenetics and Developmental Biology}},
year = {2012}
}
@incollection{Templeton2003,
author = {Templeton, Alan},
booktitle = {Population Genetics and Microevolutionary Theory},
publisher = {Wiley \& Sons},
title = {{Population Genetics and Microevolutionary Theory}},
year = {2003}
}
@article{Barton2012,
author = {Barton, N H and Turelli, Michael},
issn = {0014-3820},
journal = {Evolution; international journal of organic evolution},
month = oct,
number = {10},
pages = {2111--32},
pmid = {15562679},
title = {{Effects of genetic drift on variance components under a general model of epistasis.}},
volume = {58},
year = {2004}
}
@article{Peck1998,
author = {Peck, Steven L and Ellner, Stephen P and Gould, Fred},
doi = {10.2307/2411353},
issn = {00143820},
journal = {Evolution},
month = dec,
number = {6},
pages = {1834},
title = {{A Spatially Explicit Stochastic Model Demonstrates the Feasibility of Wright's Shifting Balance Theory}},
volume = {52},
year = {1998}
}
@article{Vladar2011,
author = {de Vladar, Harold P and Barton, N H},
doi = {10.1016/j.tree.2011.04.002},
issn = {0169-5347},
journal = {Trends in ecology \& evolution},
month = may,
pages = {1--9},
pmid = {21571390},
publisher = {Elsevier Ltd},
title = {{The contribution of statistical physics to evolutionary biology.}},
year = {2011}
}
@article{New2008,
author = {Harte, J. and Zillio, T. and Conlisk, E. and Smith, A. B.},
doi = {10.1890/07-1369.1},
issn = {0012-9658},
journal = {Ecology},
month = oct,
number = {10},
pages = {2700--2711},
title = {{MAXIMUM ENTROPY AND THE STATE-VARIABLE APPROACH TO MACROECOLOGY}},
volume = {89},
year = {2008}
}
@article{Schluter1996,
author = {Schluter, Dolph},
doi = {10.2307/2410734},
issn = {00143820},
journal = {Evolution},
month = oct,
number = {5},
pages = {1766},
title = {{Adaptive Radiation Along Genetic Lines of Least Resistance}},
volume = {50},
year = {1996}
}
@article{Ancel2000,
author = {Ancel, L W and Fontana, Walter},
issn = {0022-104X},
journal = {The Journal of experimental zoology},
month = oct,
number = {3},
pages = {242--83},
pmid = {11069142},
title = {{Plasticity, evolvability, and modularity in RNA.}},
volume = {288},
year = {2000}
}
@article{Marroig2005,
author = {Marroig, Gabriel and Cheverud, James M},
issn = {0014-3820},
journal = {Evolution; international journal of organic evolution},
month = may,
number = {5},
pages = {1128--42},
pmid = {16136810},
title = {{Size as a line of least evolutionary resistance: diet and adaptive morphological radiation in New World monkeys.}},
volume = {59},
year = {2005}
}
@article{Andrade2011,
author = {Andrade, Roberto F S and Rocha-Neto, Ivan C and Santos, Leonardo B L and de Santana, Charles N and Diniz, Marcelo V C and Lob\~{a}o, Thierry Petit and Go\'{e}s-Neto, Arist\'{o}teles and Pinho, Suani T R and El-Hani, Charbel N},
doi = {10.1371/journal.pcbi.1001131},
issn = {1553-7358},
journal = {PLoS computational biology},
month = may,
number = {5},
pages = {e1001131},
pmid = {21573202},
title = {{Detecting network communities: an application to phylogenetic analysis.}},
volume = {7},
year = {2011}
}
@article{Ehrich2003,
author = {Ehrich, Thomas H and Vaughn, Ty Y T and Koreishi, Safina F and Linsey, Robin B and Pletscher, L Susan and Cheverud, James M},
doi = {10.1002/jez.b.00009},
issn = {1552-5007},
journal = {Journal of experimental zoology. Part B, Molecular and developmental evolution},
month = apr,
number = {October 2002},
pages = {58--79},
pmid = {12658711},
title = {{Pleiotropic effects on mandibular morphology I. Developmental morphological integration and differential dominance.}},
volume = {79},
year = {2003}
}
@article{Lande1983a,
author = {Lande, Russell and Arnold, Stevan J},
doi = {10.2307/2408842},
issn = {00143820},
journal = {Evolution},
month = nov,
number = {6},
pages = {1210},
title = {{The measurement of selection on correlated characters}},
volume = {37},
year = {1983}
}
@article{Yi2007,
author = {Yi, Nengjun and Shriner, Daniel and Banerjee, Samprit and Mehta, Tapan and Pomp, Daniel and Yandell, Brian S},
doi = {10.1534/genetics.107.071365},
issn = {0016-6731},
journal = {Genetics},
month = jul,
number = {3},
pages = {1865--77},
pmid = {17483424},
title = {{An efficient Bayesian model selection approach for interacting quantitative trait loci models with many effects.}},
volume = {176},
year = {2007}
}
@article{Freckleton2006,
author = {Freckleton, Robert P and Harvey, Paul H},
doi = {10.1371/journal.pbio.0040373},
issn = {1545-7885},
journal = {PLoS biology},
month = dec,
number = {11},
pages = {e373},
pmid = {17090217},
title = {{Detecting non-Brownian trait evolution in adaptive radiations.}},
volume = {4},
year = {2006}
}
@article{Alvarez-Castro2007,
author = {Alvarez-Castro, Jos\'{e} M and Carlborg, Orjan},
doi = {10.1534/genetics.106.067348},
issn = {0016-6731},
journal = {Genetics},
month = jun,
number = {2},
pages = {1151--67},
pmid = {17409082},
title = {{A unified model for functional and statistical epistasis and its application in quantitative trait Loci analysis.}},
volume = {176},
year = {2007}
}
@article{Joe2006,
author = {Joe, Harry},
doi = {10.1016/j.jmva.2005.05.010},
issn = {0047259X},
journal = {Journal of Multivariate Analysis},
month = nov,
number = {10},
pages = {2177--2189},
title = {{Generating random correlation matrices based on partial correlations}},
volume = {97},
year = {2006}
}
@article{Turelli1988,
author = {Turelli, Michael},
doi = {10.2307/2409017},
issn = {00143820},
journal = {Evolution},
month = nov,
number = {6},
pages = {1342},
title = {{Phenotypic Evolution, Constant Covariances, and the Maintenance of Additive Variance}},
volume = {42},
year = {1988}
}
@article{Edelman2001,
author = {Edelman, G M and Gally, J a},
doi = {10.1073/pnas.231499798},
issn = {0027-8424},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
month = nov,
number = {24},
pages = {13763--8},
pmid = {11698650},
title = {{Degeneracy and complexity in biological systems.}},
volume = {98},
year = {2001}
}
@article{Patil2012,
author = {Patil, Kailash and Pressnitzer, Daniel and Shamma, Shihab and Elhilali, Mounya},
doi = {10.1371/journal.pcbi.1002759},
editor = {Theunissen, Frederic E.},
isbn = {9550091023},
issn = {1553-7358},
journal = {PLoS Computational Biology},
month = nov,
number = {11},
pages = {e1002759},
title = {{Music in Our Ears: The Biological Bases of Musical Timbre Perception}},
volume = {8},
year = {2012}
}
@article{Marroig2001,
author = {Marroig, Gabriel and Cheverud, James M},
journal = {Evolution},
number = {12},
pages = {2576--2600},
title = {{A comparison of phenotipic variation and covariation patterns and the role of phylogeny, ecology, and ontogeny during cranial evolution of new world monkeys}},
volume = {55},
year = {2001}
}
@article{Klingenberg2008,
author = {Klingenberg, Christian Peter},
doi = {10.1146/annurev.ecolsys.37.091305.110054},
journal = {Annual Review of Ecology, Evolution, and Systematics},
pages = {115--132},
title = {{Morphological Integration and Developmental Modularity}},
volume = {39},
year = {2008}
}
@article{Pavlicev2008,
author = {Pavlicev, Mihaela and Kenney-Hunt, Jane P and Norgard, Elizabeth A and Roseman, Charles C and Wolf, Jason B and Cheverud, James M},
doi = {10.1111/j.1558-5646.2007.00255.x},
issn = {0014-3820},
journal = {Evolution},
month = jan,
number = {1},
pages = {199--213},
pmid = {18005158},
shorttitle = {Evolution},
title = {{Genetic variation in pleiotropy: differential epistasis as a source of variation in the allometric relationship between long bone lengths and body weight.}},
volume = {62},
year = {2008}
}
@article{Han2004,
author = {Han, Jing-Dong J and Bertin, Nicolas and Hao, Tong and Goldberg, Debra S and Berriz, Gabriel F and Zhang, Lan V and Dupuy, Denis and Walhout, Albertha J M and Cusick, Michael E and Roth, Frederick P and Vidal, Marc},
doi = {10.1038/nature02555},
issn = {1476-4687},
journal = {Nature},
month = jul,
number = {6995},
pages = {88--93},
pmid = {15190252},
title = {{Evidence for dynamically organized modularity in the yeast protein-protein interaction network.}},
volume = {430},
year = {2004}
}
@article{Arnold1992,
author = {Arnold, Stevan J},
issn = {00030147},
journal = {The American naturalist},
number = {Supplement},
pages = {S85--S107},
publisher = {The University of Chicago Press for The American Society of Naturalists},
title = {{Constraints on Phenotypic Evolution}},
volume = {140},
year = {1992}
}
@article{Walsh2009,
author = {Walsh, Bruce and Blows, Mark W.},
doi = {10.1146/annurev.ecolsys.110308.120232},
issn = {1543-592X},
journal = {Annual Review of Ecology, Evolution, and Systematics},
month = dec,
number = {1},
pages = {41--59},
title = {{Abundant Genetic Variation + Strong Selection = Multivariate Genetic Constraints: A Geometric View of Adaptation}},
volume = {40},
year = {2009}
}
@article{Kirkpatrick2009,
author = {Kirkpatrick, Mark},
doi = {10.1007/s10709-008-9302-6},
issn = {1573-6857},
journal = {Genetica},
month = jun,
number = {2},
pages = {271--84},
pmid = {18695991},
title = {{Patterns of quantitative genetic variation in multiple dimensions.}},
volume = {136},
year = {2009}
}
@article{Ames2000,
author = {Ames, B N and Gold, L S},
issn = {0027-5107},
journal = {Mutation research},
month = jan,
number = {1},
pages = {3--13},
pmid = {10686303},
title = {{Paracelsus to parascience: the environmental cancer distraction.}},
volume = {447},
year = {2000}
}
@article{Futuyma2010,
author = {Futuyma, Douglas J},
doi = {10.1111/j.1558-5646.2010.00960.x},
issn = {1558-5646},
journal = {Evolution; international journal of organic evolution},
month = jul,
number = {7},
pages = {1865--84},
pmid = {20659157},
title = {{Evolutionary constraint and ecological consequences.}},
volume = {64},
year = {2010}
}
@article{Stewart2012,
author = {Stewart, Alexander J and Parsons, Todd L and Plotkin, Joshua B},
doi = {10.1111/j.1558-5646.2011.01526.x},
pages = {1598--1612},
title = {{ENVIRONMENTAL ROBUSTNESS AND THE ADAPTABILITY OF POPULATIONS}},
year = {2012}
}
@article{Perez2011,
author = {Perez, S I and Klaczko, J and Rocatti, G and {Dos Reis}, S F},
doi = {10.1111/j.1420-9101.2011.02309.x},
issn = {1420-9101},
journal = {Journal of evolutionary biology},
month = aug,
number = {8},
pages = {1826--35},
pmid = {21615587},
title = {{Patterns of cranial shape diversification during the phylogenetic branching process of New World monkeys (Primates: Platyrrhini).}},
volume = {24},
year = {2011}
}
@article{Charlesworth1982,
author = {Charlesworth, Brian and Lande, Russell and Slatkin, Montgomery},
doi = {10.2307/2408095},
issn = {00143820},
journal = {Evolution},
month = may,
number = {3},
pages = {474},
title = {{A Neo-Darwinian Commentary on Macroevolution}},
volume = {36},
year = {1982}
}
@article{Marroig2012,
author = {Marroig, Gabriel and Melo, Diogo A R and Garcia, Guilherme},
doi = {10.1111/j.1558-5646.2011.01555.x},
issn = {1558-5646},
journal = {Evolution; international journal of organic evolution},
month = may,
number = {5},
pages = {1506--24},
pmid = {22519787},
publisher = {Blackwell Publishing Inc},
title = {{Modularity, noise, and natural selection.}},
volume = {66},
year = {2012}
}
@article{Cheverud1995,
author = {Cheverud, James M and Routman, Eric J},
issn = {0016-6731},
journal = {Genetics},
month = mar,
number = {3},
pages = {1455--61},
pmid = {7768453},
title = {{Epistasis and its contribution to genetic variance components.}},
volume = {139},
year = {1995}
}
@article{Lynch2007,
author = {Lynch, Michael},
doi = {10.1073/pnas.0702207104},
issn = {0027-8424},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
month = may,
number = {Table 1},
pages = {8597--604},
pmid = {17494740},
title = {{The frailty of adaptive hypotheses for the origins of organismal complexity.}},
volume = {104 Suppl},
year = {2007}
}
@article{Baatz1997,
author = {Baatz, M and Wagner, G.P},
doi = {10.1006/tpbi.1997.1294},
issn = {00405809},
journal = {Theoretical Population Biology},
month = feb,
number = {1},
pages = {49--66},
title = {{Adaptive Inertia Caused by Hidden Pleiotropic Effects}},
volume = {51},
year = {1997}
}
@article{Cheverud1985a,
author = {Cheverud, J M and Leamy, L J},
journal = {Genetical Research},
number = {3},
pages = {325--335},
pmid = {4092924},
publisher = {Cambridge Univ Press},
title = {{Quantitative genetics and the evolution of ontogeny. III. Ontogenetic changes in correlation structure among live-body traits in randombred mice.}},
volume = {46},
year = {1985}
}
@article{Yi2004,
author = {Yi, Nengjun},
doi = {10.1534/genetics.104.026286},
issn = {0016-6731},
journal = {Genetics},
month = jun,
number = {2},
pages = {967--75},
pmid = {15238545},
title = {{A unified Markov chain Monte Carlo framework for mapping multiple quantitative trait loci.}},
volume = {167},
year = {2004}
}
@book{Lynch1998,
address = {Sunderland, MA.},
author = {Lynch, M. and Walsh., B.},
pages = {980},
publisher = {Sinauer},
title = {{Genetics and analysis of quantitative traits}},
year = {1998}
}
@article{Leamy1999,
author = {Leamy, Larry J and Routman, Eric J and Cheverud, James M},
doi = {0003-0147/99/5302-0004\$03.00},
journal = {The American naturalist},
number = {2},
pages = {201--214},
title = {{Quantitative trait loci for early- and late-developing skull characters in mice: a test of the genetic independence model of morphological integration}},
volume = {153},
year = {1999}
}
@article{Barton1987a,
author = {Barton, N H and Rouhani, S.},
doi = {10.1016/S0022-5193(87)80210-2},
issn = {00225193},
journal = {Journal of Theoretical Biology},
month = apr,
number = {4},
pages = {397--418},
title = {{The frequency of shifts between alternative equilibria}},
volume = {125},
year = {1987}
}
@article{Marroig2010,
author = {Marroig, Gabriel and Cheverud, James},
doi = {10.1111/j.1558-5646.2009.00920.x},
issn = {1558-5646},
journal = {Evolution; international journal of organic evolution},
month = may,
number = {5},
pages = {1470--88},
pmid = {20015239},
title = {{Size as a line of least resistance II: direct selection on size or correlated response due to constraints?}},
volume = {64},
year = {2010}
}
@article{Goodnight2000,
author = {Goodnight, C J and Wade, M J},
issn = {0014-3820},
journal = {Evolution; international journal of organic evolution},
month = feb,
number = {1},
pages = {317--24},
pmid = {10937210},
title = {{The ongoing synthesis: a reply to Coyne, Barton, and Turelli.}},
volume = {54},
year = {2000}
}
@article{Cheverud1988,
author = {Cheverud, James M.},
doi = {10.2307/2408911},
issn = {00143820},
journal = {Evolution},
month = sep,
number = {5},
pages = {958},
title = {{A Comparison of Genetic and Phenotypic Correlations}},
volume = {42},
year = {1988}
}
@article{Schurger2010,
author = {Schurger, Aaron and Pereira, Francisco and Treisman, Anne and Cohen, Jonathan D},
doi = {10.1126/science.1180029},
isbn = {2006037900},
issn = {1095-9203},
journal = {Science (New York, N.Y.)},
month = jan,
number = {5961},
pages = {97--9},
pmid = {19965385},
title = {{Reproducibility distinguishes conscious from nonconscious neural representations.}},
volume = {327},
year = {2010}
}
@incollection{Turelli1986,
address = {New York},
author = {Turelli, M},
booktitle = {Evolutionary Processes and Theory},
editor = {Nevo, E. and Karlin, S.},
isbn = {978-0123987600},
pages = {607--628},
publisher = {Academic Press},
title = {{Gaussian versus non-Gaussian genetic analyses of polygenic mutation-selection balance}},
year = {1986}
}
@article{Kingsolver2001,
author = {Kingsolver, J G and Hoekstra, H E and Hoekstra, J M and Berrigan, D and Vignieri, S N and Hill, C E and Hoang, A and Gibert, P and Beerli, P},
doi = {10.1086/319193},
issn = {1537-5323},
journal = {The American naturalist},
month = mar,
number = {3},
pages = {245--61},
pmid = {18707288},
title = {{The strength of phenotypic selection in natural populations.}},
volume = {157},
year = {2001}
}
@article{Revell2007a,
author = {Revell, Liam J},
doi = {10.1111/j.1558-5646.2007.00161.x},
issn = {0014-3820},
journal = {Evolution},
month = aug,
number = {8},
pages = {1857--72},
pmid = {17683429},
title = {{The G matrix under fluctuating correlational mutation and selection.}},
volume = {61},
year = {2007}
}
@article{Lewandowski2009,
author = {Lewandowski, Daniel and Kurowicka, Dorota and Joe, Harry},
doi = {10.1016/j.jmva.2009.04.008},
issn = {0047259X},
journal = {Journal of Multivariate Analysis},
month = oct,
number = {9},
pages = {1989--2001},
publisher = {Elsevier Inc.},
title = {{Generating random correlation matrices based on vines and extended onion method}},
volume = {100},
year = {2009}
}
@article{Yi2007a,
author = {Yi, Nengjun and Banerjee, Samprit and Pomp, Daniel and Yandell, Brian S},
doi = {10.1534/genetics.107.071142},
issn = {0016-6731},
journal = {Genetics},
month = jul,
number = {3},
pages = {1855--64},
pmid = {17507680},
title = {{Bayesian mapping of genomewide interacting quantitative trait loci for ordinal traits.}},
volume = {176},
year = {2007}
}
@book{Wolf2000,
address = {USA},
author = {Wolf, Jason B. and {Brodie III}, Edmund D. and Wade, Michael J.},
booktitle = {Oxford University Press},
edition = {1},
isbn = {0195128060},
pages = {344},
publisher = {Oxford University Press},
title = {{Epistasis and the Evolutionary Process}},
year = {2000}
}
@article{Grabowski2011,
author = {Grabowski, Mark W and Polk, John D and Roseman, Charles C},
doi = {10.1111/j.1558-5646.2011.01226.x},
institution = {Department of Anthropology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA. mgrabow3@illinois.edu},
journal = {Evolution: International Journal of Organic Evolution},
number = {5},
pages = {1336--1356},
pmid = {21521191},
title = {{Divergent patterns of integration and reduced constraint in the human hip and the origins of bipedalism.}},
volume = {65},
year = {2011}
}
@article{Orr1992,
author = {Orr, H Allen and Coyne, Jerry A},
doi = {10.1086/285437},
issn = {0003-0147},
journal = {The American naturalist},
month = nov,
number = {5},
pages = {725--42},
pmid = {19426041},
title = {{The genetics of adaptation: a reassessment.}},
volume = {140},
year = {1992}
}
@article{Jones2012,
author = {Jones, A G and B\"{u}rger, R and Arnold, S J and Hohenlohe, P A and Uyeda, J C},
doi = {10.1111/j.1420-9101.2012.02598.x},
issn = {1420-9101},
journal = {Journal of evolutionary biology},
month = sep,
pages = {1--22},
pmid = {22957960},
title = {{The effects of stochastic and episodic movement of the optimum on the evolution of the G-matrix and the response of the trait mean to selection.}},
year = {2012}
}
@article{Wagner1988,
author = {Wagner, G\"{u}nter P},
doi = {10.1046/j.1420-9101.1988.1010045.x},
issn = {1010-061X},
journal = {Journal of Evolutionary Biology},
month = jan,
number = {1},
pages = {45--66},
title = {{The influence of variation and of developmental constraints on the rate of multivariate phenotypic evolution}},
volume = {1},
year = {1988}
}
@article{Cheverud1984,
author = {Cheverud, James M},
issn = {0022-5193},
journal = {Journal of theoretical biology},
month = sep,
number = {2},
pages = {155--71},
pmid = {6492829},
title = {{Quantitative genetics and developmental constraints on evolution by selection.}},
volume = {110},
year = {1984}
}
@article{Arnold2001a,
author = {Arnold, Stevan J and Pfrender, Michael E and Jones, Adam G},
journal = {Genetica},
pages = {9--32},
title = {{The adaptive landscape as a conceptual bridge between micro- and macroevolution}},
volume = {112/113},
year = {2001}
}
@book{Falconer1996,
address = {London},
author = {Falconer, Douglas S. and Mackay, Trudy F.C.},
edition = {4th},
isbn = {978-0582243026},
publisher = {Benjamin Cummings},
title = {{Introduction to Quantitative Genetics}},
year = {1996}
}
@article{Lande1979,
author = {Lande, Russell},
doi = {10.2307/2407630},
issn = {00143820},
journal = {Evolution},
month = mar,
number = {1},
pages = {402},
title = {{Quantitative Genetic Analysis of Multivariate Evolution, Applied to Brain: Body Size Allometry}},
volume = {33},
year = {1979}
}
@book{Wickham2009,
author = {Wickham, Hadley},
isbn = {978-0-387-98140-6},
publisher = {Springer New York},
title = {ggplot2: elegant graphics for data analysis},
year = {2009}
}
@article{Kimura1965,
author = {Kimura, M.},
doi = {10.1073/pnas.54.3.731},
issn = {0027-8424},
journal = {Proceedings of the National Academy of Sciences},
month = sep,
number = {3},
pages = {731--736},
title = {{A Stochastic Model concerning the Maintenance of Genetic Variability in Quantitative Characters}},
volume = {54},
year = {1965}
}
@article{Jones2007,
author = {Jones, Adam G and Arnold, Stevan J and B\"{u}rger, Reinhard},
doi = {10.1111/j.1558-5646.2007.00071.x},
issn = {0014-3820},
journal = {Evolution},
month = apr,
number = {4},
pages = {727--45},
pmid = {17439608},
shorttitle = {Evolution},
title = {{The mutation matrix and the evolution of evolvability.}},
volume = {61},
year = {2007}
}
@article{Costanzo2010,
author = {Costanzo, Michael and Baryshnikova, Anastasia and Bellay, Jeremy and Kim, Yungil and Spear, Eric D and Sevier, Carolyn S and Ding, Huiming and Koh, Judice L Y and Toufighi, Kiana and Mostafavi, Sara and Prinz, Jeany and {St Onge}, Robert P and VanderSluis, Benjamin and Makhnevych, Taras and Vizeacoumar, Franco J and Alizadeh, Solmaz and Bahr, Sondra and Brost, Renee L and Chen, Yiqun and Cokol, Murat and Deshpande, Raamesh and Li, Zhijian and Lin, Zhen-Yuan and Liang, Wendy and Marback, Michaela and Paw, Jadine and {San Luis}, Bryan-Joseph and Shuteriqi, Ermira and Tong, Amy Hin Yan and van Dyk, Nydia and Wallace, Iain M and Whitney, Joseph a and Weirauch, Matthew T and Zhong, Guoqing and Zhu, Hongwei and Houry, Walid a and Brudno, Michael and Ragibizadeh, Sasan and Papp, Bal\'{a}zs and P\'{a}l, Csaba and Roth, Frederick P and Giaever, Guri and Nislow, Corey and Troyanskaya, Olga G and Bussey, Howard and Bader, Gary D and Gingras, Anne-Claude and Morris, Quaid D and Kim, Philip M and Kaiser, Chris a and Myers, Chad L and Andrews, Brenda J and Boone, Charles},
doi = {10.1126/science.1180823},
issn = {1095-9203},
journal = {Science (New York, N.Y.)},
month = jan,
number = {5964},
pages = {425--31},
pmid = {20093466},
title = {{The genetic landscape of a cell.}},
volume = {327},
year = {2010}
}
@article{Cheverud1997,
author = {Cheverud, James M and Routman, Eric J. and Irschick, Duncan J.},
doi = {10.2307/2411021},
issn = {00143820},
journal = {Evolution},
month = dec,
number = {6},
pages = {2006},
title = {{Pleiotropic Effects of Individual Gene Loci on Mandibular Morphology}},
volume = {51},
year = {1997}
}
@article{Hansen2008,
author = {Hansen, Thomas F and Houle, D},
doi = {10.1111/j.1420-9101.2008.01573.x},
issn = {1420-9101},
journal = {Journal of evolutionary biology},
month = sep,
number = {5},
pages = {1201--19},
pmid = {18662244},
title = {{Measuring and comparing evolvability and constraint in multivariate characters.}},
volume = {21},
year = {2008}
}
@article{Barton1989,
author = {Barton, N H and Turelli, Michael},
doi = {10.1146/annurev.genet.23.1.337},
issn = {00664197},
journal = {Annual Review of Genetics},
month = jan,
number = {1},
pages = {337--370},
title = {{Evolutionary Quantitative Genetics: How Little Do We Know}},
volume = {23},
year = {1989}
}
@article{Barton1990,
author = {Barton, N H},
issn = {0016-6731},
journal = {Genetics},
month = mar,
number = {3},
pages = {773--82},
pmid = {2311921},
title = {{Pleiotropic models of quantitative variation.}},
volume = {124},
year = {1990}
}
@article{Zhang2002,
author = {Zhang, Xu-Sheng and Hill, William G},
issn = {0016-6731},
journal = {Genetics},
month = sep,
number = {1},
pages = {459--71},
pmid = {12242254},
title = {{Joint effects of pleiotropic selection and stabilizing selection on the maintenance of quantitative genetic variation at mutation-selection balance.}},
volume = {162},
year = {2002}
}
@article{Hallgrimsson2009b,
author = {Hallgr\'{\i}msson, Benedikt and Jamniczky, Heather and Young, Nathan M. and Rolian, Campbell and Parsons, Trish E. and Boughner, Julia C. and Marcucio, Ralph S.},
doi = {10.1007/s11692-009-9076-5},
isbn = {1169200990},
issn = {0071-3260},
journal = {Evolutionary Biology},
month = nov,
number = {4},
pages = {355--376},
title = {{Deciphering the Palimpsest: Studying the Relationship Between Morphological Integration and Phenotypic Covariation}},
volume = {36},
year = {2009}
}
@article{Pavlicev2010,
author = {Pavlicev, Mihaela and Cheverud, James M and Wagner, G\"{u}nter P},
doi = {10.1098/rspb.2010.2113},
issn = {1471-2954},
journal = {Proceedings. Biological sciences / The Royal Society},
month = nov,
pmid = {21106581},
title = {{Evolution of adaptive phenotypic variation patterns by direct selection for evolvability.}},
year = {2010}
}
@article{Villmoare2012,
author = {Villmoare, Brian},
doi = {10.1007/s11692-012-9186-3},
issn = {0071-3260},
journal = {Evolutionary Biology},
month = may,
title = {{Morphological Integration, Evolutionary Constraints, and Extinction: A Computer Simulation-Based Study}},
year = {2012}
}
@book{Roff1997,
address = {New York},
author = {Roff, Derek A.},
edition = {1st},
isbn = {041212971X},
pages = {510},
publisher = {Springer},
title = {{Evolutionary Quantitative Genetics}},
year = {1997}
}
@article{Jones2003,
author = {Jones, Adam G and Arnold, Stevan J and B\"{u}rger, Reinhard},
journal = {Evolution},
number = {8},
pages = {1747--1760},
title = {{Stability of the g-matrix in a population experiencing pleiotropic mutation, stabilizing selection, and genetic drift}},
volume = {57},
year = {2003}
}
@article{Yandell2007,
author = {Yandell, Brian S. and Mehta, Tapan and Banerjee, Samprit and Shriner, Daniel and Venkataraman, Ramprasad and Moon, Jee Young and Neely, W. Whipple and Wu, Hao and von Smith, Randy and Yi, Nengjun},
doi = {10.1093/bioinformatics/btm011},
issn = {1367-4811},
journal = {Bioinformatics (Oxford, England)},
month = mar,
number = {5},
pages = {641--3},
pmid = {17237038},
title = {{R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses.}},
volume = {23},
year = {2007}
}
@article{Berg1960,
author = {Berg, R. L.},
doi = {10.2307/2405824},
issn = {00143820},
journal = {Evolution},
month = jun,
number = {2},
pages = {171},
title = {{The Ecological Significance of Correlation Pleiades}},
volume = {14},
year = {1960}
}
@article{Yi2005a,
author = {Yi, Nengjun and Yandell, Brian S and Churchill, Gary a and Allison, David B and Eisen, Eugene J and Pomp, Daniel},
doi = {10.1534/genetics.104.040386},
issn = {0016-6731},
journal = {Genetics},
month = jul,
number = {3},
pages = {1333--44},
pmid = {15911579},
title = {{Bayesian model selection for genome-wide epistatic quantitative trait loci analysis.}},
volume = {170},
year = {2005}
}
@article{Porto2009,
author = {Porto, Arthur and Oliveira, Felipe B. and Shirai, Leila T. and Conto, Valderes and Marroig, Gabriel},
doi = {10.1007/s11692-008-9038-3},
issn = {0071-3260},
journal = {Evolutionary Biology},
month = oct,
number = {1},
pages = {118--135},
title = {{The Evolution of Modularity in the Mammalian Skull I: Morphological Integration Patterns and Magnitudes}},
volume = {36},
year = {2009}
}
@article{Pavlicev2011a,
author = {Pavlicev, Mihaela and Hansen, Thomas F.},
doi = {10.1007/s11692-011-9136-5},
issn = {0071-3260},
journal = {Evolutionary Biology},
month = sep,
title = {{Genotype-Phenotype Maps Maximizing Evolvability: Modularity Revisited}},
year = {2011}
}
@article{Cheverud1996b,
author = {Cheverud, J M},
doi = {10.1046/j.1420-9101.1996.9010005.x},
issn = {1420-9101},
journal = {Journal of Evolutionary Biology},
number = {1},
pages = {5--42},
publisher = {Blackwell Science Ltd},
title = {{Quantitative genetic analysis of cranial morphology in the cotton-top (Saguinus oedipus) and saddle-back (S. fuscicollis) tamarins}},
volume = {9},
year = {1996}
}
@article{Whitlock1995,
author = {Whitlock, Michael C.},
doi = {10.2307/2410335},
issn = {00143820},
journal = {Evolution},
month = apr,
number = {2},
pages = {252},
title = {{Variance-Induced Peak Shifts}},
volume = {49},
year = {1995}
}
@article{Doroszuk2008,
author = {Doroszuk, Agnieszka and Wojewodzic, Marcin W and Gort, Gerrit and Kammenga, Jan E},
doi = {10.1086/527478},
issn = {1537-5323},
journal = {The American naturalist},
month = mar,
number = {3},
pages = {291--304},
pmid = {18271724},
title = {{Rapid divergence of genetic variance-covariance matrix within a natural population.}},
volume = {171},
year = {2008}
}
@article{Costa2008,
author = {Costa, Erico T and Forti, F\'{a}bio L and Matos, Tatiana G F and Dermargos, Alexandre and Nakano, F\'{a}bio and Salotti, Jacqueline and Rocha, K\'{a}tia M and Asprino, Paula F and Yoshihara, Celina K and Koga, Marianna M and Armelin, Hugo a},
doi = {10.1158/0008-5472.CAN-08-0342},
issn = {1538-7445},
journal = {Cancer research},
month = aug,
number = {15},
pages = {6215--23},
pmid = {18676845},
title = {{Fibroblast growth factor 2 restrains Ras-driven proliferation of malignant cells by triggering RhoA-mediated senescence.}},
volume = {68},
year = {2008}
}
@book{Olson1958,
address = {Chicago},
author = {Olson, R and Miller, E},
mendeley-tags = {Chicago,University of Chicago Press},
publisher = {University of Chicago Press},
title = {{Morphological integration}},
year = {1958}
}
@article{Wright1932,
author = {Wright, S},
editor = {Jones, D F},
journal = {Proc of the 6th International Congress of Genetics},
number = {6},
pages = {356--366},
publisher = {Brooklyn Botanic Garden},
title = {{The roles of mutation, inbreeding, crossbreeding and selection in evolution}},
volume = {1},
year = {1932}
}
@article{Wade1998,
author = {Wade, Michael J and Goodnight, Charles J},
doi = {10.2307/2411328},
issn = {00143820},
journal = {Evolution},
month = dec,
number = {6},
pages = {1537},
title = {{Perspective: The Theories of Fisher and Wright in the Context of Metapopulations: When Nature Does Many Small Experiments}},
volume = {52},
year = {1998}
}
@article{Burger1994,
author = {B\"{u}rger, Reinhard and Lande, Russell},
issn = {0016-6731},
journal = {Genetics},
month = nov,
number = {3},
pages = {901--12},
pmid = {7851784},
title = {{On the distribution of the mean and variance of a quantitative trait under mutation-selection-drift balance.}},
volume = {138},
year = {1994}
}
@inproceedings{Crow1964,
author = {Crow, J. F. and Kimura, M.},
booktitle = {Proceedings of the XI international congress of genetics.},
pages = {495--505},
title = {{The theory of genetic loads}},