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Add parameter to skip Normalization step? #9

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mr-september opened this issue Jan 22, 2021 · 1 comment
Open

Add parameter to skip Normalization step? #9

mr-september opened this issue Jan 22, 2021 · 1 comment

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@mr-september
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I have pre-normalized the data in Seurat, then converted to sce to run DEsingle (as discussed in Seurat's issues, counts=logcounts), but it seems to be re-normalizing the normalized data.

Can an argument be added to DEsingle command to not do further normalization?

@miaozhun
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I suggest to use DEsingle's normalization step with your data or re-normalize the normalized data, since DEsingle's normalization step could ensure the data work with ZINB distribution.

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