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base repository: rocker-org/rocker
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head repository: miicTeam/rocker
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  • 10 commits
  • 359 files changed
  • 1 contributor

Commits on Jul 28, 2020

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Commits on Jul 29, 2020

  1. Added tests

    vcabeli committed Jul 29, 2020
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  3. Changed tests output

    vcabeli committed Jul 29, 2020
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Commits on Aug 11, 2020

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Commits on Aug 31, 2020

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  2. Bumped tests to 1.5.0

    vcabeli committed Aug 31, 2020
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Showing 359 changed files with 16,046 additions and 1 deletion.
6 changes: 5 additions & 1 deletion r-base/latest/Dockerfile
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@@ -61,4 +61,8 @@ RUN apt-get update \
&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds \
&& rm -rf /var/lib/apt/lists/*

CMD ["R"]
## Install miic dependencies
RUN R --slave -e 'install.packages(c("glue", "rlang", "colorspace", "magrittr", "pkgconfig", "farver", "labeling", "lifecycle", "munsell", "R6", "RColorBrewer", "viridisLite", "igraph", "ppcor", "scales", "Rcpp"))'

## Copy tests to Docker image
COPY tests tests/
4 changes: 4 additions & 0 deletions r-base/latest/README.md
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@@ -8,3 +8,7 @@ See the [source directories](https://github.com/rocker-org/rocker/tree/master/r-

Documentation is being added at the [Wiki](https://github.com/rocker-org/rocker/wiki). Please file
issue tickets at [the rocker/ issue tracker](https://github.com/rocker-org/rocker/issues).

## MIIC dependencies and tests

[`miic`](https://github.com/miicTeam/miic_R_package) dependencies and tests are added at the end of the `r-base` build
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"Myb" 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0
"Nfe2" 1 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1
"Notch1" 0 1 0 0 1 -2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 -2 0 0 0 0 0 0 0 1 0 0 0
"Runx1" 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
"Sfpi1" 0 0 0 0 0 0 -2 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 -2 0 0 0 0 0 0 1 0 0
"Sox17" 0 0 0 0 0 1 0 0 0 1 0 -2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 -2 0 0 0
"Sox7" 1 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 -2 0 -2 0 1 0 0 0 0 1 0 0 2 0 0 -2 -2
"Tal1" -2 0 0 0 0 0 1 0 0 0 0 0 -2 0 0 0 -2 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0
"Tbx20" 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 1
"Tbx3" 0 0 1 0 0 0 0 2 0 1 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 0 0 2 0 1 0
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"Cbfa2t3h" "Erg" "Ets1" "Ets2" "Etv2" "Etv6" "Fli1" "FoxH1" "FoxO4" "Gata1" "Gfi1" "Gfi1b" "Hhex" "HoxB2" "HoxB4" "HoxD8" "Ikaros" "Ldb1" "Lmo2" "Lyl1" "Mecom" "Meis1" "Mitf" "Myb" "Nfe2" "Notch1" "Runx1" "Sfpi1" "Sox17" "Sox7" "Tal1" "Tbx20" "Tbx3"
"Cbfa2t3h" 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 0 1 2 0 0
"Erg" 0 0 1 0 1 0 -2 0 0 0 2 1 1 0 2 0 0 0 0 0 -2 1 0 0 0 1 0 0 0 0 0 1 0
"Ets1" 1 1 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1
"Ets2" 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
"Etv2" 1 1 -2 0 0 1 1 0 0 0 0 0 0 0 -2 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 1 0
"Etv6" 0 0 0 0 1 0 -2 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 6 0 0 0 0 0 1 0
"Fli1" 1 2 1 0 1 2 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0
"FoxH1" 0 0 0 1 0 0 0 0 1 0 0 -2 0 0 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
"FoxO4" 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0
"Gata1" 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 6 0 0 0 0 0 0 1 1 1 0 0 1 0 0 -2 0
"Gfi1" 0 -2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 -2 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0
"Gfi1b" 0 1 1 0 0 0 1 2 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 0 0
"Hhex" 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 2 0 0
"HoxB2" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
"HoxB4" 0 -2 0 0 2 0 1 0 0 0 0 1 0 0 0 6 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 1
"HoxD8" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 -2 0 0 0 0 0
"Ikaros" -2 0 0 0 0 0 0 0 -2 6 2 1 0 0 0 0 0 1 0 -2 1 1 0 1 1 0 1 0 0 6 6 0 0
"Ldb1" 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
"Lmo2" 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 6 -2 0 0
"Lyl1" 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0
"Mecom" 0 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0
"Meis1" 0 1 0 0 0 1 1 0 1 0 0 1 1 0 1 0 1 0 1 0 1 0 0 1 1 2 0 0 1 0 0 1 1
"Mitf" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
"Myb" 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 2 1 0 1 1 0
"Nfe2" 1 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 1
"Notch1" 0 1 0 0 1 6 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 -2 0 0 0 0 0 1 0 1 0 1 0
"Runx1" 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0
"Sfpi1" 0 0 0 0 0 0 -2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 -2 0 1 0 0 0 0 1 0 0
"Sox17" 0 0 1 0 0 0 0 0 1 1 0 -2 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 -2 0 0 0
"Sox7" 1 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 6 0 6 0 1 0 0 0 0 1 0 0 2 0 0 -2 6
"Tal1" -2 0 0 0 0 0 1 0 0 0 1 0 -2 0 0 0 6 0 2 1 0 0 0 1 0 0 0 1 0 0 0 0 0
"Tbx20" 0 1 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 1 0 0 2 0 0 1
"Tbx3" 0 0 1 0 0 0 0 6 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 6 0 1 0
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"Cbfa2t3h" "Erg" "Ets1" "Ets2" "Etv2" "Etv6" "Fli1" "FoxH1" "FoxO4" "Gata1" "Gfi1" "Gfi1b" "Hhex" "HoxB2" "HoxB4" "HoxD8" "Ikaros" "Ldb1" "Lmo2" "Lyl1" "Mecom" "Meis1" "Mitf" "Myb" "Nfe2" "Notch1" "Runx1" "Sfpi1" "Sox17" "Sox7" "Tal1" "Tbx20" "Tbx3"
"Cbfa2t3h" 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0
"Erg" 0 0 1 0 -2 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 -2 0 0 0 0 1 0 0 0 0 0 0 0
"Ets1" 0 1 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1
"Ets2" 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
"Etv2" 1 2 -2 0 0 0 0 0 0 0 0 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0
"Etv6" 0 0 0 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 -2 0 0 0 0 0 0 1
"Fli1" 1 1 1 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0
"FoxH1" 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
"FoxO4" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0
"Gata1" 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 -2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 -2 1
"Gfi1" 0 -2 0 0 0 0 0 0 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1
"Gfi1b" 0 1 1 0 0 0 1 0 0 1 2 0 1 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 0 1
"Hhex" 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0
"HoxB2" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
"HoxB4" 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1
"HoxD8" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
"Ikaros" 0 0 0 0 0 0 0 0 -2 2 0 1 0 0 0 0 0 1 0 1 0 1 0 -2 0 0 2 0 1 0 2 0 0
"Ldb1" 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
"Lmo2" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 -2 -2 0 0
"Lyl1" 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0
"Mecom" 0 2 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0
"Meis1" 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0
"Mitf" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
"Myb" 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 1 0 0 1 0 1 2 1 0 1 1 0
"Nfe2" 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1
"Notch1" 0 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0
"Runx1" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -2 0 0 0 0 0 0 1 -2 0 0 0 0 0 0 0 0
"Sfpi1" 0 0 0 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -2 0 0 0 0 0 0 1 0 0
"Sox17" 0 0 0 0 0 0 0 0 1 0 0 -2 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 -2 0 0 0
"Sox7" 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 2 0 1 0 0 0 0 -2 0 0 2 0 0 1 -2
"Tal1" 1 0 0 0 0 0 1 0 0 0 0 0 -2 0 0 0 -2 0 2 1 0 0 0 1 0 0 0 1 0 0 0 0 0
"Tbx20" 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 1
"Tbx3" 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0
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