Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support for circular sequences #2

Open
apcamargo opened this issue Sep 26, 2023 · 0 comments
Open

Support for circular sequences #2

apcamargo opened this issue Sep 26, 2023 · 0 comments

Comments

@apcamargo
Copy link

Expected Behavior

In circular sequences, the last and the first gene in the sequences are neighbors and should be treated as so when searching gene clusters.

Current Behavior

From what I gathered from the parameters and code, Spacedust doesn't offer an option to treat sequences as circular sequences. Having this option would be very useful, as circular sequences are very common in sequencing data.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@apcamargo