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High quality in silico spectral library generation for data-independent acquisition proteomics

Java 11 1 Updated Nov 30, 2024

Github repository for nanoSPLITS manuscript data and R scripts

HTML 6 Updated Oct 11, 2024

High accuracy RAG for answering questions from scientific documents with citations

Python 6,863 675 Updated Feb 1, 2025

R package for processing results from TopPIC, including resolving ambiguity in proteoform identification

R 4 2 Updated Jan 21, 2025

Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.

R 31 7 Updated Jan 10, 2023
Python 241 48 Updated Jan 30, 2025

Making Protein folding accessible to all!

Jupyter Notebook 2,078 511 Updated Jan 16, 2025

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

Python 164 4 Updated Dec 20, 2024

A cross-platform proteomics data analysis suite

Java 217 40 Updated Feb 1, 2025

Methods for label-free mass spectrometry proteomics

R 14 Updated Nov 30, 2023

❗ This is a read-only mirror of the CRAN R package repository. clValid — Validation of Clustering Results

R 5 6 Updated Feb 18, 2021

A Shiny web app for mapping datasets using Seurat v4

HTML 120 34 Updated Nov 5, 2024

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

C++ 309 56 Updated Jan 29, 2025

Report processing and protein quantification for MS-based proteomics

R 37 7 Updated Jun 29, 2023

A visual exploratory tool on correlation matrix

R 318 89 Updated Oct 14, 2024

Imputation of missing values of a matrix or data.frame using iterative prediction model

32 8 Updated Jan 10, 2025

Create Layout Plots of Biological Culture Plates and Microplates

R 94 6 Updated Sep 30, 2024

DEP package

R 28 13 Updated Sep 28, 2022

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

R 278 67 Updated Jul 12, 2024

A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

12 1 Updated Aug 9, 2024

🧬 gget enables efficient querying of genomic reference databases

Python 978 76 Updated Feb 1, 2025
R 1 Updated Aug 29, 2022

SCPCompanion for single cell proteomic analysis by mass spectrometry

5 2 Updated Nov 9, 2020

Peptide coefficient predictor

Jupyter Notebook 9 2 Updated Oct 19, 2022

R package for the joint analysis of multiple single-cell RNA-seq datasets

R 203 39 Updated Feb 26, 2024

Genie: Fast and Robust Hierarchical Clustering with Noise Point Detection - in Python and R

C++ 59 11 Updated Jan 31, 2025

Tools for creating ProForma v2 reports from ProSight PD, TopPIC, MSPathFinderT, and pTop top-down ID software.

C# 2 2 Updated Nov 16, 2022

A library of free open source icons for science illustrations in biology and chemistry

Vue 1,409 78 Updated Feb 3, 2025
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