Stars
High quality in silico spectral library generation for data-independent acquisition proteomics
Github repository for nanoSPLITS manuscript data and R scripts
High accuracy RAG for answering questions from scientific documents with citations
R package for processing results from TopPIC, including resolving ambiguity in proteoform identification
Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.
Making Protein folding accessible to all!
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
Methods for label-free mass spectrometry proteomics
❗ This is a read-only mirror of the CRAN R package repository. clValid — Validation of Clustering Results
A Shiny web app for mapping datasets using Seurat v4
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
Report processing and protein quantification for MS-based proteomics
Imputation of missing values of a matrix or data.frame using iterative prediction model
Create Layout Plots of Biological Culture Plates and Microplates
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.
🧬 gget enables efficient querying of genomic reference databases
SCPCompanion for single cell proteomic analysis by mass spectrometry
R package for the joint analysis of multiple single-cell RNA-seq datasets
Genie: Fast and Robust Hierarchical Clustering with Noise Point Detection - in Python and R
Tools for creating ProForma v2 reports from ProSight PD, TopPIC, MSPathFinderT, and pTop top-down ID software.
A library of free open source icons for science illustrations in biology and chemistry