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README.md

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Instructions for setting up GoSTRIPEs analysis using Singularity

  1. Follow instructions on GoSTRIPEs: https://github.com/BrendelGroup/GoSTRIPES/blob/master/HOWTO.md
  2. Clone GoSTRIPEs to your system: git clone https://github.com/BrendelGroup/GoSTRIPES
  3. Put fastqs and genome directory in your analysis directory as described in the above HOWTO.md.
  4. Edit makefile (in Pc_STRIPE) as needed to run the analysis.
  5. Submit the job script launch_job.sh (edit the source line as needed and change headers if using non-TORQUE submission system.)