- Follow instructions on GoSTRIPEs: https://github.com/BrendelGroup/GoSTRIPES/blob/master/HOWTO.md
- Clone GoSTRIPEs to your system: git clone https://github.com/BrendelGroup/GoSTRIPES
- Put fastqs and genome directory in your analysis directory as described in the above HOWTO.md.
- Edit makefile (in Pc_STRIPE) as needed to run the analysis.
- Submit the job script launch_job.sh (edit the
sourceline as needed and change headers if using non-TORQUE submission system.)
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A repo with the minimum amount of material needed for running GoSTRIPEs
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