diamond 2.1.11 #513339
BrewTestBottests.yml
on: pull_request
formulae_detect
37s
Matrix: tap_syntax
report_analytics
3s
Matrix: tests
Matrix: test_deps
conclusion
0s
Annotations
15 errors, 9 warnings, and 5 notices
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macOS 13-arm64
diamond 2.1.11 did not build
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`brew install --verbose --formula --build-bottle diamond` failed on macOS Ventura (13) on Apple Silicon!:
Formula/d/diamond.rb#L21
[ 16%] Building CXX object CMakeFiles/diamond.dir/src/basic/hssp.cpp.o
/opt/homebrew/Library/Homebrew/shims/mac/super/clang++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src -I/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/lib -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O3 -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MD -MT CMakeFiles/diamond.dir/src/basic/hssp.cpp.o -MF CMakeFiles/diamond.dir/src/basic/hssp.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/hssp.cpp.o -c /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/basic/hssp.cpp
In file included from /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/basic/hssp.cpp:23:
In file included from /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/output/output.h:26:
In file included from /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/basic/packed_transcript.h:21:
/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/util/binary_buffer.h:90:7: error: implicit instantiation of undefined template 'std::basic_string<char>'
dst.clear();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/iosfwd:248:32: note: template is declared here
class _LIBCPP_TEMPLATE_VIS basic_string;
^
In file included from /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/basic/hssp.cpp:23:
In file included from /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/output/output.h:26:
In file included from /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/basic/packed_transcript.h:21:
/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/util/binary_buffer.h:93:8: error: implicit instantiation of undefined template 'std::basic_string<char>'
dst.push_back(c);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/iosfwd:248:32: note: template is declared here
class _LIBCPP_TEMPLATE_VIS basic_string;
^
[ 16%] Building CXX object CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o
/opt/homebrew/Library/Homebrew/shims/mac/super/clang++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src -I/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/lib -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O3 -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MD -MT CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o -MF CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o.d -o CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o -c /tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/dp/ungapped_align.cpp
[ 17%] Building CXX object CMakeFiles/diamond.dir/src/run/tools.cpp.o
/opt/homebrew/Library/Homebrew/shims/mac/super/clang++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src -I/tmp/diamond-20250125-4855-7vw53/diamond-2.1.11/src/lib -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O3 -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MD -MT CMakeFiles/diamond.dir/src/run/tools.cpp.o -MF CMakeFiles/diamo
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macOS 13-arm64
install failed
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macOS 13-arm64
Process completed with exit code 1.
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macOS 13-x86_64
The job was canceled because "macOS_13-arm64_13-arm64-1" failed.
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macOS 14-x86_64
The job was canceled because "macOS_13-arm64_13-arm64-1" failed.
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Linux
The job was canceled because "macOS_13-arm64_13-arm64-1" failed.
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Linux
The operation was canceled.
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macOS 14-arm64
The job was canceled because "macOS_13-arm64_13-arm64-1" failed.
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macOS 14-arm64
The operation was canceled.
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macOS 15-arm64
The job was canceled because "macOS_13-arm64_13-arm64-1" failed.
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macOS 15-arm64
The operation was canceled.
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conclusion
`tests` job failure.
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conclusion
`test_deps` job skipped. Do not merge until re-run with `CI-no-fail-fast-deps`
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conclusion
Process completed with exit code 1.
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formulae_detect
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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report_analytics
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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setup_tests
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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setup_dep_tests
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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setup_runners
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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tap_syntax (stable)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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tap_syntax
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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setup_dep_runners
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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conclusion
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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macOS 13-arm64
0 bottle(s)
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macOS 13-arm64
0 failed bottle(s)
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macOS 13-arm64
1 list(s) of skipped formulae
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macOS 13-arm64
0 list(s) of successfully tested dependents
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conclusion
`tests` job status: failure
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Artifacts
Produced during runtime
| Name | Size | |
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bottles_13-arm64-12964317771
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787 Bytes |
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bottles_14-arm64-12964317771
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460 Bytes |
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bottles_15-arm64-12964317771
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1.5 MB |
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bottles_ubuntu-latest
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460 Bytes |
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logs_13-arm64-12964317771
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17.5 KB |
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logs_14-arm64-12964317771
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29.7 KB |
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logs_15-arm64-12964317771
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29.7 KB |
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logs_ubuntu-latest
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6.99 KB |
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