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Update README.md
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BAevermann authored Oct 27, 2021
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Expand Up @@ -12,12 +12,12 @@ Install python 3.6 or above. Download NSForest_v3.py file

### Using NS-Forest v3.0

from NSForest_v3 import *
import itertools
from NSForest_v3 import * <br />
import itertools<br />

adata_markers = NS_Forest(adata) #Runs NS_Forest on scanpy object
Markers = list(itertools.chain.from_iterable(adata_markers['NSForest_Markers'])) #gets list of minimal markers from dataframe for display in scanpy plotting functions
Binary_Markers = list(itertools.chain.from_iterable(adata_markers['Binary_Genes'])) #gets list of binary markers from dataframe for display in scanpy plotting functions
adata_markers = NS_Forest(adata) #Runs NS_Forest on scanpy object <br />
Markers = list(itertools.chain.from_iterable(adata_markers['NSForest_Markers'])) #gets list of minimal markers from dataframe for display in scanpy plotting functions <br />
Binary_Markers = list(itertools.chain.from_iterable(adata_markers['Binary_Genes'])) #gets list of binary markers from dataframe for display in scanpy plotting functions <br />

### NS-Forest v3.0 parameters

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