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pmc-ref is built on an API that is also available as part of this project.
A limited number of routes are available but there is scope for more - particularly to make use of available citation* and journal data.
###Current routes###
/api/v1/articles/doi/
/api/v1/journals/title/
###What you get from them###
/api/v1/articles/doi/
accepts a doi and returns all the data for that doi
Example: https://pmc-ref.herokuapp.com/api/v1/articles/doi/10.1038%2Fnature10158
To return just the references that are free to access append ?references=free
Example: https://pmc-ref.herokuapp.com/api/v1/articles/doi/10.1038%2Fnature10158?references=free
/api/v1/journals/title/
accepts a journal title and returns the articles published in that journal.
Example: https://pmc-ref.herokuapp.com/api/v1/journals/title/Nature
Journal titles are stored using their ISO abbreviation. A list of journals and their ISO abbreviations is hosted here by ncbi.nih.gov in various formats.
###Suggestions###
I'd love to here what else would be useful so please feel free to make a suggestion of open an issue.
*the data was collected around October 2014 and has not been updated since - instructions how to use the pipeline to collect more data will follow soon.