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cole-trapnell-lab · Sep 3, 2022 · a082514 · a082514
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diff --git a/.Rbuildignore b/.Rbuildignore
diff --git a/.gitignore b/.gitignore
diff --git a/.travis.yml b/.travis.yml
diff --git a/DESCRIPTION b/DESCRIPTION
diff --git a/LICENSE b/LICENSE
diff --git a/NAMESPACE b/NAMESPACE
diff --git a/NEWS b/NEWS
diff --git a/R/activityScores.R b/R/activityScores.R
diff --git a/R/aggregate.R b/R/aggregate.R
diff --git a/R/cicero.R b/R/cicero.R
diff --git a/R/data.R b/R/data.R
diff --git a/R/fromGviz.R b/R/fromGviz.R
diff --git a/R/plotting.R b/R/plotting.R
diff --git a/R/runCicero.R b/R/runCicero.R
diff --git a/R/utils.R b/R/utils.R
diff --git a/README.md b/README.md
diff --git a/code-of-conduct.md b/code-of-conduct.md
diff --git a/codecov.yml b/codecov.yml
diff --git a/data/cell_data.rda b/data/cell_data.rda
diff --git a/data/cicero_data.rda b/data/cicero_data.rda
diff --git a/data/gene_annotation_sample.rda b/data/gene_annotation_sample.rda
diff --git a/data/human.hg19.genome.rda b/data/human.hg19.genome.rda
diff --git a/inst/CITATION b/inst/CITATION
diff --git a/man/aggregate_by_cell_bin.Rd b/man/aggregate_by_cell_bin.Rd
diff --git a/man/aggregate_nearby_peaks.Rd b/man/aggregate_nearby_peaks.Rd
diff --git a/man/annotate_cds_by_site.Rd b/man/annotate_cds_by_site.Rd
diff --git a/man/assemble_connections.Rd b/man/assemble_connections.Rd
diff --git a/man/build_gene_activity_matrix.Rd b/man/build_gene_activity_matrix.Rd
diff --git a/man/cell_data.Rd b/man/cell_data.Rd
diff --git a/man/cicero-package.Rd b/man/cicero-package.Rd
diff --git a/man/cicero_data.Rd b/man/cicero_data.Rd
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diff --git a/tests/cicero_data_sub.txt b/tests/cicero_data_sub.txt
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