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compomics · Aug 11, 2021 · 7605639 · 7605639
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Showing 18 changed files with 177 additions and 169 deletions.
diff --git a/package/build/lib/pout2prot/Analyzer.py b/package/build/lib/pout2prot/Analyzer.py
@@ -1,6 +1,6 @@
-from ProteinGrouping import create_protein_groups
-from ProteinSubGrouping import create_protein_subgroups
-from OccamsRazorPreprocessor import occam_filter
+from .ProteinGrouping import create_protein_groups
+from .ProteinSubGrouping import create_protein_subgroups
+from .OccamsRazorPreprocessor import occam_filter
 
 
 def protein_grouping_analysis(occam_flag, protein_peptide_dict, peptide_protein_dict):

diff --git a/package/build/lib/pout2prot/main.py b/package/build/lib/pout2prot/main.py
@@ -1,13 +1,13 @@
-from Parser import parser
-from Analyzer import protein_grouping_analysis
-from OutputWriter import write_to_file
+from .Parser import parser
+from .Analyzer import protein_grouping_analysis
+from .OutputWriter import write_to_file
 
 import argparse
 
 # handling of command line (or config file) arguments
 def parse_args():
     parser = argparse.ArgumentParser(description=__doc__)
-    parser.add_argument("input", help="A single pout file, or folder containing all input pout files that should be processed.")
+    parser.add_argument("input", help="A single pout file, folder containing all input pout files, or folder with sub folders (sample categories) containing pout files.")
     parser.add_argument("groups_output_file", help="File to which the found protein groups should be written to.")
     parser.add_argument("subgroups_output_file", help="File to which the found protein subgroups should be written to.")
     parser.add_argument("--occam", action="store_true", help="Use Occam's razor during the computation of the grouping process.", default=False)

diff --git a/package/dist/pout2prot-1.2.0.tar.gz b/package/dist/pout2prot-1.2.0.tar.gz
diff --git a/...age/dist/pout2prot-1.2.0-py3-none-any.whl → ...age/dist/pout2prot-1.2.1-py3-none-any.whl b/...age/dist/pout2prot-1.2.0-py3-none-any.whl → ...age/dist/pout2prot-1.2.1-py3-none-any.whl
diff --git a/package/dist/pout2prot-1.2.1.tar.gz b/package/dist/pout2prot-1.2.1.tar.gz
diff --git a/package/pout2prot.egg-info/PKG-INFO b/package/pout2prot.egg-info/PKG-INFO
@@ -1,6 +1,6 @@
 Metadata-Version: 1.0
 Name: pout2prot
-Version: 1.2.0
+Version: 1.2.1
 Summary: A script to perform protein grouping on pout-files (generated by Percolator).
 Home-page: UNKNOWN
 Author: Pieter Verschaffelt

diff --git a/package/pout2prot/Analyzer.py b/package/pout2prot/Analyzer.py
@@ -1,6 +1,6 @@
-from ProteinGrouping import create_protein_groups
-from ProteinSubGrouping import create_protein_subgroups
-from OccamsRazorPreprocessor import occam_filter
+from .ProteinGrouping import create_protein_groups
+from .ProteinSubGrouping import create_protein_subgroups
+from .OccamsRazorPreprocessor import occam_filter
 
 
 def protein_grouping_analysis(occam_flag, protein_peptide_dict, peptide_protein_dict):

diff --git a/package/pout2prot/__target__/Analyzer.js b/package/pout2prot/__target__/Analyzer.js
diff --git a/package/pout2prot/__target__/Analyzer.project b/package/pout2prot/__target__/Analyzer.project
diff --git a/package/pout2prot/__target__/OccamsRazorPreprocessor.js b/package/pout2prot/__target__/OccamsRazorPreprocessor.js
diff --git a/package/pout2prot/__target__/ProteinGrouping.js b/package/pout2prot/__target__/ProteinGrouping.js
diff --git a/package/pout2prot/__target__/ProteinSubGrouping.js b/package/pout2prot/__target__/ProteinSubGrouping.js