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added expected data for custom weight runs using exponentials score
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@AdamDS
AdamDS committed Sep 26, 2017
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27 changes: 27 additions & 0 deletions Demo/Expected/randCharged.clusters
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Cluster Gene/Drug Mutation/Gene Degree_Connectivity Exponentials_Score Geodesic_From_Centroid Weight Chromosome Start Stop Reference Alternate Transcript Alternative_Transcripts
0.0 SMAD4 p.C499Y 3 1.16908570802571 0 6 18 48604674 48604674 G A ENST00000342988 ENST00000398417:p.C499Y|ENST00000588745:p.C403Y
0.0 SMAD4 p.L533R 13 0.981088765229413 5.515 3 18 48604776 48604776 T G ENST00000342988 ENST00000398417:p.L533R|ENST00000588745:p.L437R
0.0 SMAD4 p.R496H 5 1.03983373944558 6.3805 4 18 48604665 48604665 G A ENST00000342988 ENST00000398417:p.R496H|ENST00000588745:p.R400H
0.1 SMAD3 p.C320Y 6 0.919675174972574 8.626 11 15 67477152 67477152 G A ENST00000327367 ENST00000439724:p.C276Y|ENST00000537194:p.C125Y|ENST00000540846:p.C215Y|ENST00000560424:p.V14I
0.1 SMAD3 p.G325D 3 0.939939825266249 0 11 15 67477167 67477167 G A ENST00000327367 ENST00000439724:p.G281D|ENST00000537194:p.G130D|ENST00000540846:p.G220D|ENST00000560424:p.A19T
0.1 SMAD3 p.R323H 4 0.863466320870942 8.032 12 15 67477161 67477161 G A ENST00000327367 ENST00000439724:p.R279H|ENST00000537194:p.R128H|ENST00000540846:p.R218H|ENST00000560424:p.A17T
0.2 SMAD2 p.P305L 12 -0.296243722345417 9.525 -10 18 45374929 45374929 G A ENST00000262160 ENST00000356825:p.P275L|ENST00000402690:p.P305L|ENST00000586040:p.P275L|ENST00000591214:p.P275L
0.2 SMAD2 p.P305Q 12 -0.296243722345417 9.525 -13 18 45374929 45374929 G T ENST00000262160 ENST00000356825:p.P275Q|ENST00000402690:p.P305Q|ENST00000586040:p.P275Q|ENST00000591214:p.P275Q
0.2 SMAD4 p.D355G 14 0.0855389630387233 9.78566666666667 -4 18 48591901 48591901 A G ENST00000342988 ENST00000398417:p.D355G|ENST00000588745:p.D259G
0.2 SMAD4 p.P356L 17 0.212765174701278 9.754 -18 18 48591904 48591904 C T ENST00000342988 ENST00000398417:p.P356L|ENST00000588745:p.P260L
0.2 SMAD4 p.R531Q 5 0.808640973449221 0 2 18 48604770 48604770 G A ENST00000342988 ENST00000398417:p.R531Q|ENST00000588745:p.R435Q
0.3 SMAD4 p.C324R 4 0.750609781489441 0 2 18 48591807 48591807 T C ENST00000342988 ENST00000398417:p.C324R|ENST00000588745:p.C228R
1.0 SMAD2 p.G421W 3 0.292512240488933 7.85733333333333 17 18 45371730 45371730 C A ENST00000262160 ENST00000356825:p.G391W|ENST00000402690:p.G421W|ENST00000586040:p.G391W|ENST00000591214:p.G391W
1.0 SMAD2 p.R427Q 2 0.638489895278524 0 9 18 45371711 45371711 C T ENST00000262160 ENST00000356825:p.R397Q|ENST00000402690:p.R427Q|ENST00000586040:p.R397Q|ENST00000591214:p.R397Q
1.1 SMAD2 p.F356C 2 -0.271103434056128 0 -7 18 45372102 45372102 A C ENST00000262160 ENST00000356825:p.F326C|ENST00000402690:p.F356C|ENST00000586040:p.F326C|ENST00000591214:p.F326C
2.0 SMAD2 p.Q407E 2 -0.879168169936484 0 -18 18 45371772 45371772 G C ENST00000262160 ENST00000356825:p.Q377E|ENST00000402690:p.Q407E|ENST00000586040:p.Q377E|ENST00000591214:p.Q377E
2.0 SMAD2 p.S397F 3 -1.32402344220386 8.963 -8 18 45371801 45371801 G A ENST00000262160 ENST00000356825:p.S367F|ENST00000402690:p.S397F|ENST00000586040:p.S367F|ENST00000591214:p.S367F
2.1 SMAD2 p.V398A 2 -1.2914349790785 0 -6 18 45371798 45371798 A G ENST00000262160 ENST00000356825:p.V368A|ENST00000402690:p.V398A|ENST00000586040:p.V368A|ENST00000591214:p.V368A
3.0 SMAD3 p.Q23R 2 -0.253291248195851 8.746 -8 15 67358560 67358560 A G ENST00000327367 -
3.0 SMAD3 p.Q26H 2 0.720457237033846 0 0 15 67358570 67358570 G T ENST00000327367
4.0 SMAD3 p.L91P 2 -0.516719347310039 8.391 -5 15 67457298 67457298 T C ENST00000327367 ENST00000439724:p.L47P|ENST00000559092:p.C73R
4.0 SMAD3 p.R93Q 2 0.270011434953025 0 10 15 67457304 67457304 G A ENST00000327367 ENST00000439724:p.R49Q|ENST00000559092:p.D75N
6.0 SMAD3 p.R420H 3 -1.40869407672404 0 -15 15 67482855 67482855 G A ENST00000327367 ENST00000439724:p.R376H|ENST00000537194:p.R225H|ENST00000540846:p.R315H|ENST00000560424:p.A151T
6.0 SMAD3 p.S416F 3 -1.60292498502272 9.259 -7 15 67482843 67482843 C T ENST00000327367 ENST00000439724:p.S372F|ENST00000537194:p.S221F|ENST00000540846:p.S311F|ENST00000560424:p.P147S
6.0 SMAD3 p.S418I 3 -1.94449837501548 7.11 -1 15 67482849 67482849 G T ENST00000327367 ENST00000439724:p.S374I|ENST00000537194:p.S223I|ENST00000540846:p.S313I|ENST00000560424:p.A149S
6.0 SMAD3 p.S418N 3 -1.94449837501548 7.11 -19 15 67482849 67482849 G A ENST00000327367 ENST00000439724:p.S374N|ENST00000537194:p.S223N|ENST00000540846:p.S313N|ENST00000560424:p.A149T
12 changes: 12 additions & 0 deletions Demo/Expected/randCharged.clusters.summary
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Cluster_ID Centroid Cluster_Exponentials_Score Recurrence_Mass Avg_Exponentials Avg_Recurrence Avg_Degree Avg_Geodesic N_Genes N_Vertices N_Genomic_Mutations N_Protein_Mutations N_Protein_Sites N_Protein_Positions N_Drugs Genes Transcripts Genomic_Mutations Protein_Mutations Protein_Sites Protein_Positions Drugs
0.0 SMAD4:p.C499Y 3.190 3 1.063 1.000 7.000 3.965 1 3 3 3 NA 3 NA SMAD4(3) ENST00000342988(3) SMAD4:18:48604665:48604665:G:A,SMAD4:18:48604674:48604674:G:A,SMAD4:18:48604776:48604776:T:G SMAD4:p.C499Y,SMAD4:p.L533R,SMAD4:p.R496H NA 496,499,533 NA
0.1 SMAD3:p.G325D 2.723 3 0.908 1.000 4.333 5.553 1 3 3 3 NA 3 NA SMAD3(3) ENST00000327367(3) SMAD3:15:67477152:67477152:G:A,SMAD3:15:67477161:67477161:G:A,SMAD3:15:67477167:67477167:G:A SMAD3:p.C320Y,SMAD3:p.G325D,SMAD3:p.R323H NA 320,323,325 NA
0.2 SMAD4:p.R531Q 0.514 5 0.103 1.000 12.000 7.718 2 5 5 5 NA 4 NA SMAD2(2),SMAD4(3) ENST00000262160(2),ENST00000342988(3) SMAD2:18:45374929:45374929:G:A,SMAD2:18:45374929:45374929:G:T,SMAD4:18:48591901:48591901:A:G,SMAD4:18:48591904:48591904:C:T,SMAD4:18:48604770:48604770:G:A SMAD2:p.P305L,SMAD2:p.P305Q,SMAD4:p.D355G,SMAD4:p.P356L,SMAD4:p.R531Q NA 305,355,356,531 NA
0.3 SMAD4:p.C324R 0.751 1 0.751 1.000 4.000 0.000 1 1 1 1 NA 1 NA SMAD4(1) ENST00000342988(1) SMAD4:18:48591807:48591807:T:C SMAD4:p.C324R NA 324 NA
1.0 SMAD2:p.R427Q 0.931 2 0.466 1.000 2.500 3.929 1 2 2 2 NA 2 NA SMAD2(2) ENST00000262160(2) SMAD2:18:45371711:45371711:C:T,SMAD2:18:45371730:45371730:C:A SMAD2:p.G421W,SMAD2:p.R427Q NA 421,427 NA
1.1 SMAD2:p.F356C -0.271 1 -0.271 1.000 2.000 0.000 1 1 1 1 NA 1 NA SMAD2(1) ENST00000262160(1) SMAD2:18:45372102:45372102:A:C SMAD2:p.F356C NA 356 NA
2.0 SMAD2:p.Q407E -2.203 2 -1.102 1.000 2.500 4.481 1 2 2 2 NA 2 NA SMAD2(2) ENST00000262160(2) SMAD2:18:45371772:45371772:G:C,SMAD2:18:45371801:45371801:G:A SMAD2:p.Q407E,SMAD2:p.S397F NA 397,407 NA
2.1 SMAD2:p.V398A -1.291 1 -1.291 1.000 2.000 0.000 1 1 1 1 NA 1 NA SMAD2(1) ENST00000262160(1) SMAD2:18:45371798:45371798:A:G SMAD2:p.V398A NA 398 NA
3.0 SMAD3:p.Q26H 0.467 2 0.234 1.000 2.000 4.373 1 2 2 2 NA 2 NA SMAD3(2) ENST00000327367(2) SMAD3:15:67358560:67358560:A:G,SMAD3:15:67358570:67358570:G:T SMAD3:p.Q23R,SMAD3:p.Q26H NA 23,26 NA
4.0 SMAD3:p.R93Q -0.247 2 -0.123 1.000 2.000 4.196 1 2 2 2 NA 2 NA SMAD3(2) ENST00000327367(2) SMAD3:15:67457298:67457298:T:C,SMAD3:15:67457304:67457304:G:A SMAD3:p.L91P,SMAD3:p.R93Q NA 91,93 NA
6.0 SMAD3:p.R420H -6.901 4 -1.725 1.000 3.000 5.870 1 4 4 4 NA 3 NA SMAD3(4) ENST00000327367(4) SMAD3:15:67482843:67482843:C:T,SMAD3:15:67482849:67482849:G:A,SMAD3:15:67482849:67482849:G:T,SMAD3:15:67482855:67482855:G:A SMAD3:p.R420H,SMAD3:p.S416F,SMAD3:p.S418I,SMAD3:p.S418N NA 416,418,420 NA
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