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@funkelab

Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 81 56

  2. lsd lsd Public

    🌈

    Python 53 34

  3. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 29 18

  4. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 28 5

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 21 2

  6. linajea linajea Public

    Python 17 7

Repositories

Showing 10 of 73 repositories
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac’s past year of commit activity
    Python 1 MIT 0 7 1 Updated Feb 3, 2025
  • motile Public

    Multi-Object Tracker using Integer Linear Equations

    funkelab/motile’s past year of commit activity
    Python 28 MIT 5 18 4 Updated Feb 3, 2025
  • witty Public

    A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

    funkelab/witty’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Feb 3, 2025
  • motile_tracker Public

    An application for interactive for tracking with motile

    funkelab/motile_tracker’s past year of commit activity
    Python 6 BSD-3-Clause 4 34 3 Updated Jan 30, 2025
  • finn Public

    finn is (not) napari

    funkelab/finn’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 29, 2025
  • geff Public

    Reference implementation of the Graph Exchange File Format

    funkelab/geff’s past year of commit activity
    Python 0 MIT 0 11 0 Updated Jan 29, 2025
  • drosophila_neurotransmitters Public

    Neurotransmitter ground truth

    funkelab/drosophila_neurotransmitters’s past year of commit activity
    TeX 1 0 0 0 Updated Jan 27, 2025
  • motile_toolbox Public

    A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

    funkelab/motile_toolbox’s past year of commit activity
    Python 4 1 2 2 Updated Jan 21, 2025
  • funlib.persistence Public

    Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

    funkelab/funlib.persistence’s past year of commit activity
    Python 4 MIT 11 7 1 Updated Jan 20, 2025
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph’s past year of commit activity
    C++ 3 MIT 1 3 0 Updated Jan 17, 2025
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