chore: remove from snakemake args

matinnuhamunada · Jul 15, 2024 · 62cdd8a · 62cdd8a
1 parent 92f2970
commit 62cdd8a
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diff --git a/.gitignore b/.gitignore
@@ -3,3 +3,7 @@ resources/**
 logs/**
 .snakemake
 .snakemake/**
+config/
+data/
+.panoptes.db
+Rplots.pdf
diff --git a/README.md b/README.md
@@ -60,7 +60,7 @@ Run panoptes to monitor jobs:
 
 Do a dry-run:
 
-    snakemake --snakefile workflow/Snakefile-assembly --use-conda --cores $N --wms-monitor http://127.0.0.1:5000 -n
+    snakemake --snakefile workflow/Snakefile-assembly --use-conda --cores 8 --wms-monitor http://127.0.0.1:5000 -n
 
 We can then open `http://127.0.0.1:5000` to monitor our jobs
 ![panoptes](workflow/report/figures/panoptes.png)