List of Adapted Codes

As a collection, COPADS adapted numerous codes available from other sources. Wherever possible, specific credits are given within individual source files. The original sources can be found in doc/adaptation_source directory.

A summary of credits to acknowledge the works of various authors/developers is as follows:

• MatrixError subclasses (MatrixError, MatrixArithmeticError, MatrixMultiplicationError, MatrixAdditionError, MatrixSquareError, MatrixTraceError, MatrixMinorError, MatrixDeterminantError). File: doc/adaptation_source/189971.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/189971
• Matrix class. File: doc/adaptation_source/189971.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/189971
• Bag class. File: doc/adaptation_source/259174.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/259174
• GeometricMean, HarmonicMean, ArithmeticMean, Median, MedianScore, Mode, Moment, Variation, Skew, Kurtosis, Describe. File: doc/adapation_source/harvard_gary_stat.py. http://www.nmr.mgh.harvard.edu/Neural_Systems_Group/gary/python/stats.py
• asdict, items, count, contents, intersection, difference, itemindex, indexesof, take, take_byfn, fcmp, intd, safe_log, safe_log2, safe_exp, Euclidean. BioPython project.
• PriorityDictionary class. File: doc/adaptation_source/117228.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/117228
• RingList class. File: doc/adaptation_source/435902.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/435902
• Levenshtein distance. http://www.hetland.org/python/distance.py
• Vector class. File: doc/adaptation_source/52272.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/52272
• SparseMatrix class. File: doc/adaptation_source/52275.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/52275
• floatRgb, strRgb, rgc, htmlRgb. File: doc/adaptation_source/52275.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/52275
• Red-Black Tree. File: doc/adaptation_source/RBTree.py. http://newcenturycomputers.net/projects/rbtree.html
• Dijkstra. File: doc/adaptation_source/119466.py. http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/119466
• Numerical algorithms by Tom Loredo. File: doc/adaptation_source/2000_June_039873.py. http://mail.python.org/pipermail/python-list/2000-June/039873.html
• Digamma, trigamma functions by Gavin E Crooks. File: doc/adaptation_source/moremaths.py. http://www.koders.com/python/fidA1F143F7BBA4CFACA5F3442265D17800581A493F.aspx
• AVL Tree. File: doc/adaptation_source/AVLTree.py. http://bjourne.blogspot.com/2006/11/avl-tree-in-python.html