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Add new UniProt functions to vignette
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moosa-r committed Dec 31, 2024
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62 changes: 45 additions & 17 deletions vignettes/rbioapi_uniprot.Rmd
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Expand Up @@ -127,15 +127,25 @@ The search variants are not limited to the above. Here is a list of the function

5. `rba_uniprot_antigens()` & `rba_uniprot_antigens_search()`

6. `rba_uniprot_proteomes()` & `rba_uniprot_proteomes_search()`
6. `rba_uniprot_epitope()` & `rba_uniprot_epitope_search()`

7. `rba_uniprot_ptm()` & `rba_uniprot_ptm_search()`
7. `rba_uniprot_rna_edit()` & `rba_uniprot_rna_edit_search()`

8. `rba_uniprot_mutagenesis()` & `rba_uniprot_mutagenesis_search()`
8. `rba_uniprot_proteomes()` & `rba_uniprot_proteomes_search()`

9. `rba_uniprot_genecentric()` & `rba_uniprot_genecentric_search()`
9. `rba_uniprot_ptm()` & `rba_uniprot_ptm_search()`

10. `rba_uniprot_uniparc()` & `rba_uniprot_uniparc_search()`
10. `rba_uniprot_mutagenesis()` & `rba_uniprot_mutagenesis_search()`

11. `rba_uniprot_proteomics_hpp()` & `rba_uniprot_proteomics_hpp_search()`

12. `rba_uniprot_proteomics_non_ptm()` & `rba_uniprot_proteomics_non_ptm_search()`

13. `rba_uniprot_proteomics_ptm()` & `rba_uniprot_proteomics_ptm_search()`

14. `rba_uniprot_genecentric()` & `rba_uniprot_genecentric_search()`

15. `rba_uniprot_uniparc()` & `rba_uniprot_uniparc_search()`

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Expand Down Expand Up @@ -165,29 +175,45 @@ The UniProt API endpoints are organized into 5 group. Here are those categories

`rba_uniprot_variation_search()`

### Proteomics {#proteins-proteomics}
### Antigens {#antigens}

- `rba_uniprot_proteomics()`
- `rba_uniprot_antigens()`

- `rba_uniprot_proteomics_search()`
- `rba_uniprot_antigens_search()`

## Post-Translational Modification (PTM) {#post-translational-modification-ptm}
### Epitopes {#epitopes}

- `rba_uniprot_ptm()`
- `rba_uniprot_epitope()`

- `rba_uniprot_ptm_search()`
- `rba_uniprot_epitope_search()`

## Antigens {#antigens}
### Mutagenesis {#mutagenesis}

- `rba_uniprot_antigens()`
- `rba_uniprot_mutagenesis()`

- `rba_uniprot_antigens_search()`
- `rba_uniprot_mutagenesis_search()`

## Mutagenesis {#mutagenesis}
### RNA-Editing {#rna-editing}

- `rba_uniprot_mutagenesis()`
- `rba_uniprot_rna_edit()`

- `rba_uniprot_mutagenesis_search()`
- `rba_uniprot_rna_edit_search()`

## Proteomics {#proteomics}

- `rba_uniprot_proteomics_species()`

- `rba_uniprot_proteomics_hpp()`

- `rba_uniprot_proteomics_hpp_search()`

- `rba_uniprot_proteomics_non_ptm()`

- `rba_uniprot_proteomics_non_ptm_search()`

- `rba_uniprot_proteomics_ptm()`

- `rba_uniprot_proteomics_ptm_search()`

## Proteomes {#proteomes}

Expand Down Expand Up @@ -223,6 +249,8 @@ The UniProt API endpoints are organized into 5 group. Here are those categories

- `rba_uniprot_coordinates_sequence()`

- `rba_uniprot_genome_coordinates_sequence()`

## UniParc {#uniparc}

- `rba_uniprot_uniparc()`
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