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Use pathlib Path in corpus_loader #72

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30 changes: 12 additions & 18 deletions deidentify/dataset/corpus_loader.py
Original file line number Diff line number Diff line change
@@ -1,41 +1,35 @@
import glob
from os.path import basename, dirname, join, normpath, splitext
from pathlib import Path

from deidentify.base import Corpus, Document
from deidentify.dataset import brat

BASE_PATH = join(dirname(__file__), '../../data/corpus/')
DUMMY_CORPUS = join(BASE_PATH, 'dummy/')

_CORPUS_DIRS = map(lambda dir: basename(normpath(dir)), glob.glob(BASE_PATH + '/*/'))
CORPUS_PATH = {c: join(BASE_PATH, c + '/') for c in _CORPUS_DIRS}


def get_basename(full_path):
return splitext(basename(full_path))[0]
BASE_PATH = Path(__file__).resolve().parent / '../../data/corpus'
DUMMY_CORPUS = BASE_PATH / 'dummy'
CORPUS_PATH = {p.name: p for p in BASE_PATH.glob('*/')}


class CorpusLoader:

@staticmethod
def _load_folder(path):
files = glob.glob(join(path, '*.ann'))
def _load_folder(path: Path):
files = path.glob('*.ann')
files = sorted(files)

documents = []
for file in files:
doc_name = get_basename(file)
doc_name = file.stem
annotations, text = brat.load_brat_document(path, doc_name)
doc = Document(name=doc_name, text=text, annotations=annotations)
documents.append(doc)

return documents

def load_corpus(self, path) -> Corpus:
corpus_name = basename(normpath(path))
path = Path(path)
corpus_name = path.name

train = self._load_folder(join(path, 'train'))
test = self._load_folder(join(path, 'test'))
dev = self._load_folder(join(path, 'dev'))
train = self._load_folder(path / 'train')
test = self._load_folder(path / 'test')
dev = self._load_folder(path / 'dev')

return Corpus(train=train, test=test, dev=dev, name=corpus_name)