Merge pull request #16 from mazzalab/1.1.0dev

bump version to 1.1.0dev

.nf-core.yml

@@ -11,4 +11,4 @@ template:
   outdir: .
   skip_features:
     - igenomes
-  version: 1.0.0
+  version: 1.1.0dev

CHANGELOG.md

@@ -3,9 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v[1.0.0](https://github.com/nf-core/fastqrepair/releases/tag/1.0.0) - Catanzaro YellowRed [04/02/2025]
-
-Initial release of nf-core/fastqrepair, created with the [nf-core](https://nf-co.re/) template.
+## v[1.1.0](https://github.com/nf-core/fastqrepair/releases/tag/1.1.0) - Trento YellowBlue [XX/YY/202Z]
 
 <!--
 Added
@@ -14,6 +12,10 @@ Dependencies
 Deprecated
 -->
 
+## v[1.0.0](https://github.com/nf-core/fastqrepair/releases/tag/1.0.0) - Catanzaro YellowRed [04/02/2025]
+
+Initial release of nf-core/fastqrepair, created with the [nf-core](https://nf-co.re/) template.
+
 ### `Fixed`
 
 - [PR #2](https://github.com/nf-core/fastqrepair/pull/2) - First release

README.md

@@ -6,7 +6,7 @@
 </h1>
 
 [![GitHub Actions CI Status](https://github.com/nf-core/fastqrepair/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/fastqrepair/actions/workflows/ci.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/fastqrepair/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/fastqrepair/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/fastqrepair/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/nf-core/fastqrepair/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/fastqrepair/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/fastqrepair/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.14796348-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.14796348)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A524.04.2-23aa62.svg)](https://www.nextflow.io/)
@@ -87,8 +87,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->
-<!-- If you use nf-core/fastqrepair for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->
+If you use nf-core/fastqrepair for your analysis, please cite it using the following doi: [10.5281/zenodo.14796348](https://doi.org/10.5281/zenodo.14796348)
 
 An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.
 

assets/multiqc_config.yml

@@ -1,7 +1,8 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/fastqrepair/releases/tag/1.0.0" target="_blank">nf-core/fastqrepair</a>
-  analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/fastqrepair/1.0.0/docs/output" target="_blank">documentation</a>.
+  This report has been generated by the <a href="https://github.com/nf-core/fastqrepair/tree/dev"
+  target="_blank">nf-core/fastqrepair</a> analysis pipeline. For information about
+  how to interpret these results, please see the <a href="https://nf-co.re/fastqrepair/dev/docs/output"
+  target="_blank">documentation</a>.
 report_section_order:
   "nf-core-fastqrepair-methods-description":
     order: -1000

nextflow.config

@@ -243,7 +243,7 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'main'
     nextflowVersion = '!>=24.04.2'
-    version         = '1.0.0'
+    version         = '1.1.0dev'
     doi             = ''
 }