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v1.3.1 - 2025-01-20 - Micrometre patch

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@grst grst released this 27 Jan 11:40
1.3.1
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Added

  • #94 - Added nf-tests for local subworkflows NORMALIZE and QUALITY_CONTROL.
  • #99 - Added nf-tests for local module NACHO_NORMALIZE.
  • #100 - Added nf-tests for local module NACHO_QC.
  • #101 - Added nf-tests for local module COMPUTE_GENE_SCORES.
  • #102 - Added nf-tests for local module CREATE_GENE_HEATMAP.
  • #103 - Added nf-tests for local module CREATE_ANNOTATED_TABLES.
  • #104 - Update all nf-core modules and subworkflows.

Fixed

  • #119 - Fix input channels being consumed, convert them to value channels for CREATE_ANNOTATED_TABLES and CREATE_GENE_HEATMAP. #118

Changed

  • #82 - Updated to nf-core template 3.0.2
  • #95 - Add pipeline level nf-tests.
  • #96 - Remove timestamp suffix from nacho_norm.R and write_out_prepared_gex.R
  • #114 - Convert CREATE_GENE_HEATMAP and COMPUTE_GENE_SCORES to nf-core format and create a subworkflow for them.
  • #117 - Convert NACHO_NORMALIZE and NACHO_QC from local to nf-core modules.
  • #122 - Updated to nf-core template 3.1.1

Dependencies

Dependency Old version New version
multiqc 1.24.1 1.27
Assets 2
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