nf-core/pixelator v1.4.0

What's Changed

• Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in #111
• Add graph refinement options for pixelator 0.19 by @fbdtemme in #112
• Fix validation issues after nf-core/tools v3 template update by @fbdtemme in #113
• Remove --save_recovered_components options for graph outputs by @fbdtemme in #114
• Update containers for 0.19.0 by @fbdtemme in #115
• Bump version for 1.4 release by @fbdtemme in #116
• Important! Template update for nf-core/tools v3.1.0 by @nf-core-bot in #117
• Update metromap, bump conda versions by @fbdtemme in #118
• Add process_long labels to AMPLICON and COLLAPSE by @fbdtemme in #120
• Important! Template update for nf-core/tools v3.1.1 by @mirpedrol in #122
• Add manifest.contributors metadata to nextflow.config by @fbdtemme in #124
• Use environment.yml files for all conda process directives by @fbdtemme in #125
• Add nf-test tests for local modules and subworkflows by @fbdtemme in #123
• Release 1.4 by @fbdtemme in #121

Parameters

Old parameter	New parameter
	--help_full
	--show_hidden
--validationFailUnrecognisedParams
--validationLenientMode
--validationSchemaIgnoreParams
--validationShowHiddenParams
--leiden_iterations	--graph_max_refinement_recursion_depth
	--graph_max_edges_to_split
	--graph_max_edges_to_split
--save_recovered_components

Note

Parameter has been updated if both old and new parameter information is present.
Parameter has been added if just the new parameter information is present.
Parameter has been removed if new parameter information isn't present.

Software dependencies

Dependency	Old version	New version
pixelator	0.18.2	0.19.0

Note

Dependency has been updated if both old and new parameter information is present.
Dependency has been added if just the new parameter information is present.
Dependency has been removed if new parameter information isn't present.

New Contributors

• @mirpedrol made their first contribution in #122

Full Changelog: 1.3.1...1.4.0