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    17 repositories

    • libpdb-redo

      Public
      Library containing shared code for various PDB-REDO programs
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • libcifpp

      Public
      Library containing code to manipulate mmCIF and PDB files
      protein-structuremmcifpdb-files
      C++
      •
      BSD 2-Clause "Simplified" License
      •14•31•1•2•Updated Jan 28, 2025Jan 28, 2025

    • density-fitness

      Public
      Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•5•0•0•Updated Jan 28, 2025Jan 28, 2025

    • alphafill

      Public
      AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
      C++
      •
      BSD 2-Clause "Simplified" License
      •19•93•0•0•Updated Jan 28, 2025Jan 28, 2025

    • dssp-server

      Public
      Web server implementation for DSSP
      C++
      •0•1•0•0•Updated Jan 27, 2025Jan 27, 2025

    • pdb-redo-session-manager

      Public
      A session manager for PDB-REDO
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jan 25, 2025Jan 25, 2025

    • dssp

      Public
      Application to assign secondary structure to proteins
      proteinspdbdssp
      C++
      •
      BSD 2-Clause "Simplified" License
      •20•176•2•0•Updated Jan 22, 2025Jan 22, 2025

    • cif-tools

      Public
      A suite of programs to manipulate and examine mmCIF files
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•3•0•0•Updated Jan 22, 2025Jan 22, 2025

    • platonyzer

      Public
      CMake
      •
      BSD 2-Clause "Simplified" License
      •0•0•1•0•Updated Jan 22, 2025Jan 22, 2025

    • tortoize

      Public
      Application to calculate ramachandran z-scores
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • fix-entry-id

      Public
      Application to change the entry_id of an mmCIF file
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • pdb-redo-archive-manager

      Public
      An daemon that provides access to archived PDB-REDO entries
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • AlphaBridge

      Public
      Python
      •
      Other
      •4•32•3•0•Updated Dec 10, 2024Dec 10, 2024

    • pdb-redo-main

      Public
      core pdb-redo script, tools and data files
      Shell
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • pdb-redo-builder

      Public
      Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • privateer

      Public
      The Swiss Army knife for carbohydrate structure validation, refinement and analysis
      C++
      •
      GNU Lesser General Public License v2.1
      •9•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • 3d-beacons-registry

      Public
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Jul 23, 2022Jul 23, 2022