Skip to content

Commit

Permalink
deploy: 810fe86
Browse files Browse the repository at this point in the history
  • Loading branch information
epijim committed Feb 15, 2024
1 parent dde9a98 commit f74acbc
Show file tree
Hide file tree
Showing 7 changed files with 35 additions and 42 deletions.
2 changes: 1 addition & 1 deletion content/cicdworkflows-enhanced/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -241,7 +241,7 @@ <h1 class="title">Enhanced CICD workflows</h1>
</div>
</div>
<div class="list grid quarto-listing-cols-3">
<div class="g-col-1" data-index="0" data-categories="Testing,Documentation,Validation" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3">
<div class="g-col-1" data-index="0" data-categories="Testing,Documentation,Validation" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3">
<a href="../../content/cicdworkflows-enhanced/posts/validate/validate.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down
6 changes: 3 additions & 3 deletions content/cicdworkflows-minimum/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -245,7 +245,7 @@ <h1 class="title">Minimum CICD workflows</h1>
</div>
</div>
<div class="list grid quarto-listing-cols-3">
<div class="g-col-1" data-index="0" data-categories="Testing" data-listing-date-sort="1692748800000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="g-col-1" data-index="0" data-categories="Testing" data-listing-date-sort="1692748800000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<a href="../../content/cicdworkflows-minimum/posts/r-cmd-check/r-cmd-check.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down Expand Up @@ -275,7 +275,7 @@ <h5 class="no-anchor card-title listing-title">
</div>
</a>
</div>
<div class="g-col-1" data-index="1" data-categories="Documentation,R" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="g-col-1" data-index="1" data-categories="Documentation,R" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<a href="../../content/cicdworkflows-minimum/posts/pkgdown.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down Expand Up @@ -308,7 +308,7 @@ <h5 class="no-anchor card-title listing-title">
</div>
</a>
</div>
<div class="g-col-1" data-index="2" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4">
<div class="g-col-1" data-index="2" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4">
<a href="../../content/cicdworkflows-minimum/posts/code-coverage.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down
2 changes: 1 addition & 1 deletion content/cicdworkflows-recommend/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -245,7 +245,7 @@ <h1 class="title">Minimum CICD workflows</h1>
</div>
</div>
<div class="list grid quarto-listing-cols-3">
<div class="g-col-1" data-index="0" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081042" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="g-col-1" data-index="0" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<a href="../../content/cicdworkflows-recommend/posts/check-links/check-links.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down
25 changes: 9 additions & 16 deletions index.html
Original file line number Diff line number Diff line change
Expand Up @@ -228,7 +228,7 @@
<div class="grid">
<section id="welcome-to-the-home-of-pharmadevops" class="g-col-12 g-col-lg-8 top-story-text">
<h2>Welcome to the home of <strong>PharmaDevOps</strong></h2>
<p>This PHUSE working group is initially focussed on ensuring R package authors can easily add CICD to pharmaverse R packages and related biostastical packages.</p>
<p>This PHUSE working group is initially focussed on ensuring R package authors can easily add CICD to pharmaverse R packages and related biostatistical packages.</p>
<p>Our aim is not to re-invent the wheel. We hope to both convince package developers of the value of CICD, provide a minimum bar of what is expected, and provide a set of tools to make it easy to implement.</p>
</section>
<div class="g-col-12 g-col-lg-4 top-story-img">
Expand All @@ -249,7 +249,7 @@ <h2>Welcome to the home of <strong>PharmaDevOps</strong></h2>
<h2>Getting started with CICD</h2>
<p>In this guidance, you’ll see a number of <code>gh-actions</code> that you can use to implement CICD on your project. We have categorised these into three groups:</p>
<ul>
<li><em>Minimum CICD</em>: These are the minimum CICD tools we recommend for all packages, including those in the <code>pharmaverse</code> and <code>openstatsware</code>. These CICD tools are focussed on ensuring your package works, and documentation matches the code.</li>
<li><em>Minimum CICD</em>: These are the minimum CICD tools we recommend for all packages, including those in the <code>pharmaverse</code> and <code>openstatsware</code>. These CICD tools are focussed on ensuring your package works, and the documentation users see matches the latest release of your code.</li>
<li><em>Recommended CICD</em>: These are tools we feel make your life developing and releasing robust code easier.</li>
<li><em>Enhanced CICD</em>: These are tools are option tools for power users, or those with specific needs.</li>
</ul>
Expand All @@ -261,14 +261,6 @@ <h2>Getting started with CICD</h2>
<li>Implement CICD on your git repo!</li>
</ul>
<p>We’ve also collected togther <a href="post/posts/external-resources.html">this list of external learning resources</a>.</p>
<!--# Notes on getting started
Provide a master version (e.g. here's a single file with all the recomended) [TODO]
How the triggers work is confusing, and changing CICD based on what's happening (PR to specific branch) - deeper dive on how to automate checks in workflow, e.g. catch bugs before main [TODO]
Ensure we put upfront what the benefit is for each recomended (e.g. coverage gives you a badge, version bumping updates your description file, keeping built artifacts like docs out of the main code, etc) [TODO]
Flag important parameters with notes in the gh-action code so users can understand what's going on [TODO]
Enabling advanced workflows - e.g. test against current prod branch of the pharmaverse r-universe [TODO]
Should we have badge if they meet minimum cicd? [TODO]
-->
</section>
</div>
</div>
Expand All @@ -279,10 +271,11 @@ <h2>Getting started with CICD</h2>
<p><a href="./content/cicdworkflows-minimum/index.html"></a></p><a href="./content/cicdworkflows-minimum/index.html">
<h2 id="minimum-cicd">Minimum CICD</h2>
<p>The following CICD is what we consider a minimum bar for a package on the pharmaverse. These CICD tools are focussed on ensuring your package works, and documentation matches the code.</p>
<p>There is no need to use the specific code we suggest, if you are happy getting the same functionality from another source, like the ones built into <code>usethis</code>.</p>
</a><p><a href="./content/cicdworkflows-minimum/index.html"></a></p>
<div id="listing-cicdworkflows-minimum" class="quarto-listing quarto-listing-container-grid">
<div class="list grid quarto-listing-cols-3">
<div class="g-col-1" data-index="0" data-categories="Testing" data-listing-date-sort="1692748800000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="g-col-1" data-index="0" data-categories="Testing" data-listing-date-sort="1692748800000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<a href="./content/cicdworkflows-minimum/posts/r-cmd-check/r-cmd-check.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down Expand Up @@ -312,7 +305,7 @@ <h5 class="no-anchor card-title listing-title">
</div>
</a>
</div>
<div class="g-col-1" data-index="1" data-categories="Documentation,R" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="g-col-1" data-index="1" data-categories="Documentation,R" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<a href="./content/cicdworkflows-minimum/posts/pkgdown.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down Expand Up @@ -345,7 +338,7 @@ <h5 class="no-anchor card-title listing-title">
</div>
</a>
</div>
<div class="g-col-1" data-index="2" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4">
<div class="g-col-1" data-index="2" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4">
<a href="./content/cicdworkflows-minimum/posts/code-coverage.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down Expand Up @@ -393,7 +386,7 @@ <h2 id="recommended-cicd">Recommended CICD</h2>
</a><p><a href="./content/cicdworkflows-recommend/index.html"></a></p>
<div id="listing-cicdworkflows-recommend" class="quarto-listing quarto-listing-container-grid">
<div class="list grid quarto-listing-cols-3">
<div class="g-col-1" data-index="0" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081042" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="g-col-1" data-index="0" data-categories="Documentation,Links" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<a href="./content/cicdworkflows-recommend/posts/check-links/check-links.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down Expand Up @@ -437,11 +430,11 @@ <h5 class="no-anchor card-title listing-title">
<div class="listing-block">
<p><a href="./content/cicdworkflows-enhanced/index.html"></a></p><a href="./content/cicdworkflows-enhanced/index.html">
<h2 id="enhanced-cicd">Enhanced CICD</h2>
<p>The following CICD are tools are option tools for power users.</p>
<p>The following CICD are tools are optional tools for power users.</p>
</a><p><a href="./content/cicdworkflows-enhanced/index.html"></a></p>
<div id="listing-cicdworkflows-enhanced" class="quarto-listing quarto-listing-container-grid">
<div class="list grid quarto-listing-cols-3">
<div class="g-col-1" data-index="0" data-categories="Testing,Documentation,Validation" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708012081038" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3">
<div class="g-col-1" data-index="0" data-categories="Testing,Documentation,Validation" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3">
<a href="./content/cicdworkflows-enhanced/posts/validate/validate.html" class="quarto-grid-link">
<div class="quarto-grid-item card h-100 card-left">
<p class="card-img-top">
Expand Down
4 changes: 2 additions & 2 deletions meetings/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -188,7 +188,7 @@ <h1 class="title">Meetings</h1>

<div class="quarto-listing quarto-listing-container-default" id="listing-listing">
<div class="list quarto-listing-default">
<div class="quarto-post image-right" data-index="0" data-listing-date-sort="1691712000000" data-listing-file-modified-sort="1708012081042" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
<div class="quarto-post image-right" data-index="0" data-listing-date-sort="1691712000000" data-listing-file-modified-sort="1708013180545" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
<div class="thumbnail">
<p><a href="../meetings/minutes/2023-08-11.html"> <div class="listing-item-img-placeholder card-img-top" >&nbsp;</div> </a></p>
</div>
Expand All @@ -213,7 +213,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="1" data-listing-date-sort="1687478400000" data-listing-file-modified-sort="1708012081042" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
<div class="quarto-post image-right" data-index="1" data-listing-date-sort="1687478400000" data-listing-file-modified-sort="1708013180541" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
<div class="thumbnail">
<p><a href="../meetings/minutes/2023-06-23.html"> <div class="listing-item-img-placeholder card-img-top" >&nbsp;</div> </a></p>
</div>
Expand Down
4 changes: 2 additions & 2 deletions post/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -187,7 +187,7 @@ <h1 class="title">Posts</h1>

<div class="quarto-listing quarto-listing-container-default" id="listing-listing">
<div class="list quarto-listing-default">
<div class="quarto-post image-right" data-index="0" data-listing-date-sort="1698019200000" data-listing-file-modified-sort="1708012081042" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="quarto-post image-right" data-index="0" data-listing-date-sort="1698019200000" data-listing-file-modified-sort="1708013180545" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
<div class="thumbnail">
<p><a href="../post/posts/gh-actions.html"> <div class="listing-item-img-placeholder card-img-top" >&nbsp;</div> </a></p>
</div>
Expand All @@ -212,7 +212,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="1" data-listing-date-sort="1698019200000" data-listing-file-modified-sort="1708012081042" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
<div class="quarto-post image-right" data-index="1" data-listing-date-sort="1698019200000" data-listing-file-modified-sort="1708013180545" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
<div class="thumbnail">
<p><a href="../post/posts/external-resources.html"> <div class="listing-item-img-placeholder card-img-top" >&nbsp;</div> </a></p>
</div>
Expand Down
34 changes: 17 additions & 17 deletions sitemap.xml
Original file line number Diff line number Diff line change
Expand Up @@ -2,70 +2,70 @@
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
<url>
<loc>https://phuse-org.github.io/devops/meetings/minutes/2023-06-23.html</loc>
<lastmod>2024-02-15T15:48:09.838Z</lastmod>
<lastmod>2024-02-15T16:06:29.725Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/meetings/index.html</loc>
<lastmod>2024-02-15T15:48:09.330Z</lastmod>
<lastmod>2024-02-15T16:06:29.161Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/post/posts/gh-actions.html</loc>
<lastmod>2024-02-15T15:48:08.786Z</lastmod>
<lastmod>2024-02-15T16:06:28.549Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/contact.html</loc>
<lastmod>2024-02-15T15:48:08.202Z</lastmod>
<lastmod>2024-02-15T16:06:27.893Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-minimum/posts/r-cmd-check/r-cmd-check.html</loc>
<lastmod>2024-02-15T15:48:07.498Z</lastmod>
<lastmod>2024-02-15T16:06:27.117Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-minimum/index.html</loc>
<lastmod>2024-02-15T15:48:06.610Z</lastmod>
<lastmod>2024-02-15T16:06:26.297Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-recommend/index.html</loc>
<lastmod>2024-02-15T15:48:05.646Z</lastmod>
<lastmod>2024-02-15T16:06:25.369Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-enhanced/index.html</loc>
<lastmod>2024-02-15T15:48:04.558Z</lastmod>
<lastmod>2024-02-15T16:06:24.509Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/about.html</loc>
<lastmod>2024-02-15T15:48:03.078Z</lastmod>
<lastmod>2024-02-15T16:06:22.829Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/index.html</loc>
<lastmod>2024-02-15T15:48:04.186Z</lastmod>
<lastmod>2024-02-15T16:06:24.097Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-enhanced/posts/validate/validate.html</loc>
<lastmod>2024-02-15T15:48:05.230Z</lastmod>
<lastmod>2024-02-15T16:06:25.005Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-recommend/posts/check-links/check-links.html</loc>
<lastmod>2024-02-15T15:48:06.086Z</lastmod>
<lastmod>2024-02-15T16:06:25.789Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-minimum/posts/pkgdown.html</loc>
<lastmod>2024-02-15T15:48:07.066Z</lastmod>
<lastmod>2024-02-15T16:06:26.705Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/content/cicdworkflows-minimum/posts/code-coverage.html</loc>
<lastmod>2024-02-15T15:48:07.962Z</lastmod>
<lastmod>2024-02-15T16:06:27.629Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/post/index.html</loc>
<lastmod>2024-02-15T15:48:08.538Z</lastmod>
<lastmod>2024-02-15T16:06:28.269Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/post/posts/external-resources.html</loc>
<lastmod>2024-02-15T15:48:09.022Z</lastmod>
<lastmod>2024-02-15T16:06:28.813Z</lastmod>
</url>
<url>
<loc>https://phuse-org.github.io/devops/meetings/minutes/2023-08-11.html</loc>
<lastmod>2024-02-15T15:48:09.562Z</lastmod>
<lastmod>2024-02-15T16:06:29.433Z</lastmod>
</url>
</urlset>

0 comments on commit f74acbc

Please sign in to comment.