updated 3 July 2024; Krista Longecker
I cloned the BIOS-SCOPE/data_pipeline repository as I have made so many changes that it was going to be messy for the original intended use of the data_pipeline. Working in redbluewater account for now, but will also tidy up the BIOS-SCOPE data_pipeline to go back to where I was in Ruth's MATLAB code.
Wrote calcDerivedVariables_BATSallTime_v4.m to run through all the BATS cruises and pull the set of variables needed here. Then I use calculateSeason_KL.m to go ahead and take a first pass at the boundaries for each season. This is definitely not perfect, so I export the results to a CSV file that gets edited manually by looking at each cruise/year result. The edited Excel file is seasons_wKLedits.2024.07.03.xlsx. With that file in hand, go back to the MATLAB files to use those bounds for season rather than some automated option.
Edit file(s) on my local computer, then to get the files back to GitHub, use this set of commands to put onto GitHub:
git add -A or git add MATLAB_code/\ * (or whatever folder you want)
git commit -am "Brief description goes here" (can use the bit in quotes to describe the update)
git push
(enter the passcode I use to get files to GitHub)