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Christoph Hafemeister committed Dec 16, 2020
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## Known Issues

* `error in evaluating the argument 'x' in selecting a method for function 't': missing value where TRUE/FALSE needed` - this is happens when poisson regression fails due to poor initialization (affected methods are poisson, qpoisson, nb_fast). The problem has been fixed in the develop branch. ([issue #71](https://github.com/ChristophH/sctransform/issues/71))
* There can be problems deploying shiny apps due to the `biocViews:` line in the DESCRIPTION file. Fixed in the develop branch. ([issue #72](https://github.com/ChristophH/sctransform/issues/72))
* No residuals when using `method = 'glmGamPoi'` while specifying a `batch_var`. Fixed in the develop branch. ([issue #74](https://github.com/ChristophH/sctransform/issues/74))

To install from the develop branch run `remotes::install_github("ChristophH/sctransform@develop")`
None so far - please use [the issue tracker](https://github.com/ChristophH/sctransform/issues) if you encounter a problem

## News
For a detailed change log have a look at the file [NEWS.md](https://github.com/ChristophH/sctransform/blob/master/NEWS.md)

### v0.3.2
This release improves the coefficient initialization in quasi poisson regression that sometimes led to errors. There are also some minor bug fixes and a new non-parametric differential expression test for sparse non-negative data (`diff_mean_test`).

### v0.3.1
This release fixes a performance regression when `sctransform::vst` was called via `do.call`, as is the case in the Seurat wrapper.

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