fix log info

shenwei356 · May 3, 2017 · 27a453d · 27a453d
1 parent 678ec47
commit 27a453d
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Showing 4 changed files with 11 additions and 11 deletions.
diff --git a/doc/docs/download.md b/doc/docs/download.md
@@ -1,7 +1,7 @@
 # Download
 
 `TaxonKit` is implemented in [Go](https://golang.org/) programming language,
- executable binary files **for most popular operating system** are freely available
+ executable binary files **for most popular operating systems** are freely available
   in [release](https://github.com/shenwei356/taxonkit/releases) page.
 
 ## Current Version

diff --git a/doc/docs/tutorial.md b/doc/docs/tutorial.md
@@ -35,7 +35,7 @@ Taking virus for example.
         </s>
         It costs ~ 8 minutes.
 
-3. Retrieving nr sequences:
+3. Retrieving nr sequences from BLAST database:
 
     - accesion
 
@@ -52,7 +52,7 @@ Taking virus for example.
                 blastdbcmd -db nr -entry_batch - -out nr.virus.fa
         </s>
 
-    Another way is retrieving from [nr FASTA sequences](ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz) using [SeqKit](http://bioinf.shenwei.me/seqkit/download):
+    Another way is directly retrieving from [nr FASTA sequences](ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz) using [SeqKit](http://bioinf.shenwei.me/seqkit/download):
 
         gzip -c -d nr.gz | seqkit grep -f virus.taxid.acc.txt > nr.virus.fa
 

diff --git a/doc/docs/usage.md b/doc/docs/usage.md
@@ -384,13 +384,13 @@ Example data
 1. show rank
 
         $ cat names.txt | taxonkit name2taxid --show-rank
-        Homo sapiens    9606
-        Akkermansia muciniphila ATCC BAA-835    349741
-        Akkermansia muciniphila 239935
-        Mouse Intracisternal A-particle 11932
+        Homo sapiens    9606    species
+        Akkermansia muciniphila ATCC BAA-835    349741  no rank
+        Akkermansia muciniphila 239935  species
+        Mouse Intracisternal A-particle 11932   species
         Wei Shen
-        uncultured murine large bowel bacterium BAC 54B 314101
-        Croceibacter phage P2559Y       1327037
+        uncultured murine large bowel bacterium BAC 54B 314101  species
+        Croceibacter phage P2559Y       1327037 species
 
 1. from name to lineage
 

diff --git a/taxonkit/cmd/name2taxid.go b/taxonkit/cmd/name2taxid.go
@@ -47,7 +47,7 @@ var name2taxidCmd = &cobra.Command{
 		files := getFileList(args)
 
 		if len(files) == 1 && isStdin(files[0]) && !xopen.IsStdin() {
-			checkError(fmt.Errorf("tdin not detected"))
+			checkError(fmt.Errorf("stdin not detected"))
 		}
 
 		outfh, err := xopen.Wopen(config.OutFile)
@@ -66,7 +66,7 @@ var name2taxidCmd = &cobra.Command{
 			reader, err := breader.NewBufferedReader(config.NodesFile, config.Threads, 10, taxonParseFunc)
 			checkError(err)
 
-			ranks := make(map[int32]string)
+			ranks = make(map[int32]string)
 			var info taxonInfo
 			var n int64
 			for chunk := range reader.Ch {