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mpileup

Here are 5 public repositories matching this topic...

y9c / cpup

Convert mpileup format to base count tsv table

bioinformatics mutations samtools snp-genotyping mpileup rna-modifications dna-modifications

Updated Dec 19, 2023
C++

TC-Hewitt / MuTrigo

Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).

python snps ngs python3 snp fasta mutant snv samtools ngs-analysis ngs-pipeline mpileup pileup

Updated Sep 24, 2023
Python

vsoch / mpileup

run the parse pileup perl script using Docker

perl mpileup

Updated Jun 22, 2018
Perl

neil-n-zhang / fastpileup

Run BAM file pileup using multithreads

mpileup

Updated Dec 12, 2023
Python

adeschen / mpileupTools

This python script parses a mpileup file to extract the coverage of each base at each position.

parser coverage bioinformatics position python27 bioinformatics-scripts mpileup

Updated Sep 20, 2024
Python

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