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Required Metadata
jlchang edited this page Nov 3, 2020
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Studies uploaded using the SCP Metadata convention must include the following required metadata:
| Metadata Name | Content | Description |
|---|---|---|
| NAME | string | unique identifier for each cell in the study, must be first column in metadata file |
| biosample_id | string | unique identifier for each sample in the study |
| donor_id | string | unique identifier for each biosample donor in the study |
| species | ontology | ontology identifier from NCBItaxon |
| species__ontology_label | ontology_label | ontology label from NCBItaxon |
| disease | ontology | ontology identifier from MONDO or PATO (if no disease, use ontology ID "PATO_0000461") |
| disease__ontology_label | ontology_label | ontology label from MONDO or PATO (if no disease, use ontology label "normal") |
| organ | ontology | ontology identifier from Uberon |
| organ__ontology_label | ontology_label | ontology label from Uberon |
| library_preparation_protocol | ontology | ontology identifier from Experimental Factor ontology:library preparation |
| library_preparation_protocol__ontology_label | ontology_label | ontology label from Experimental Factor ontology:library preparation |
| sex | controlled list (enum) | one of ["male", "female", "mixed", "unknown"] |
Required ontology metadata must include corresponding ontology labels with column header <ontology>__ontology_label to enable validation.
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